Devosia oryziradicis: JI749_03875
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Entry
JI749_03875 CDS
T09885
Symbol
ligD
Name
(GenBank) DNA ligase D
Organism
doy
Devosia oryziradicis
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QQR36780
LinkDB
All DBs
Position
complement(772092..774533)
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AA seq
813 aa
AA seq
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MADKLSTYRAKRDFARTSEPAGAIGSGSNRFVIHKHHATADHYDLRLELDGVLKSWAVPK
GPSLNPADKRFAARTEDHPIEYIDFEAVIPEGEYGGGPMIVWDTGTWAPMEDPHEGLAKG
AFKFRLVGEKLRGGWMLARLKGKPEDKGKESWILFKERDTFMSTTEDILQTRPESVKTGR
LIEELVAPPPPPTAPLKKTTKPQPAKLAGAIKAPLPATAELQLASPADKVPRADGGYLHE
IKFDGYRTLAFVEGTTTRLITRGGLDWTRRYGDLPEAFAALGVKDAIIDGEIVVLDNKGI
SRFGMLQDALSSGAGNRLVFYAFDLLHLDGWDLRAAPLVKRKALLAQLLSGHVTPRSAIQ
YSDHVEGDGQPLLDMASEQGLEGIVSKRSDARYSAGRSSTWLKVKALKLGDFVIAGYSES
AANGGIGALAMGEWVEGELVYRGKVGTGFDAATMKSMVDRLAQLRIDDKLEGAPKEIIAV
RPILTGRVQYATMTSDGMLRHAVFKGLRQAELTTPISAPVKRIISDADLAGIWVTNPTRR
LFGKSGPTKLDIAVYYAAVGDYMLPHLFNRPVSLFRCPTGKPGDCFFQRHPFTGMPTTLK
SFETQNSEGESQVYISVEDAKGYLALAQFGVIEFHAWGTHASHIDKPDRVIFDLDPGEGI
AWRDVVNAAVHLRGELEGMGLKPFVKTSGGKGVHIVVPTTKKLTWKQAHAACATIAVALA
KTGKDTFTTTMGEQNRKGRIFIDYHRNARSATAVAAYSLRARPHLPASTPIDWRDLESID
SPEDLNYSTLPGLLTTAGDPWADINESARDLAP
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagctcagcacctaccgcgccaagcgcgactttgcccgcaccagtgaaccg
gcaggcgccattggcagcggcagcaatcgcttcgtcatccacaagcatcacgccacggcc
gaccattacgacctgcgcctcgagctcgatggcgtgctcaagagctgggccgtgcccaag
gggccctcgctcaatccggccgacaagcgcttcgccgctcgcacggaagaccatcctatc
gaatatatcgacttcgaggccgtgatccccgagggcgaatatggcggcggaccgatgatc
gtctgggacaccggcacctgggcgccgatggaagacccgcatgaaggcctcgccaagggc
gctttcaagtttcgcctggtcggggaaaaactccgcggcggctggatgctcgcccgcctc
aagggcaagccggaggataaaggcaaggagagctggatcctgttcaaggaacgggacacg
ttcatgtcgaccaccgaggatatcctccagacccggcccgaaagcgtcaagaccggccgg
ctgatcgaggagctggtcgccccaccgccaccaccgaccgcgccgctcaagaagacgacg
aagccccagccggccaagctggccggcgcgatcaaggcaccattgcccgcaaccgcggag
ctgcagctcgcctcgccagccgacaaggtgccgcgtgccgatggcggctatctgcacgag
atcaagttcgacggctatcgcacactggccttcgttgagggcacaacgacccgcctgatc
acccgcggcgggctcgactggaccaggcgctacggcgacctgccggaggccttcgcggcg
ctcggggtcaaggatgccattatcgacggcgagatcgtcgtgctcgacaacaagggcatc
agccgcttcggcatgctccaggacgcgctatcatcaggcgctggcaacaggctggtcttc
tatgccttcgacctgctccatctcgacggctgggatcttcgcgccgcgccgctggtcaag
cgcaaggccctgctggcgcaactgttgtccggccacgtaacacctcgctcggccattcag
tattccgaccatgtcgaaggcgacggccagccgctcctcgacatggcgtccgagcagggt
ctcgagggcattgtcagcaagcgcagcgatgcccggtatagcgccggccgttcctccacc
tggctcaaggtcaaggcgctcaagctcggcgatttcgtcatcgccggttatagcgagagc
gcggccaacggcggcatcggcgccctggccatgggcgaatgggtcgagggcgagctggtc
taccgcggcaaggtcggcaccggctttgatgcagcgacgatgaagtccatggtcgaccgc
ctcgcccagttgcgcatcgatgacaagctcgaaggcgcacccaaggaaatcatcgcggta
cggcccatcctcaccggccgcgtgcagtatgccaccatgacgtcagacggcatgctgcgc
cacgccgtattcaagggcctgcgccaggccgagctgacgacgccgatttcagcaccggtc
aagcgcatcatttccgatgccgacctggccggcatctgggtcaccaacccgacccgccgg
ctgttcggcaagtccggcccgaccaagctcgatatcgcggtctattacgccgcggtgggc
gactacatgctgccgcacctgttcaaccggccggtctcgctgttccgctgccccaccggc
aagccgggtgactgcttcttccagcgccacccctttaccggcatgccgacgaccctcaag
agcttcgagacgcagaattcggaaggcgaaagccaggtctatatctcggtcgaagacgct
aagggttatctggcgctggcccagttcggtgtcatcgaattccacgcctggggcacccat
gccagccatatcgacaagccggaccgggtgatcttcgacctcgatccgggcgagggcatc
gcctggcgcgacgtggtcaacgcggccgtgcacctgcgtggcgaactcgagggcatgggg
ctcaagcctttcgtcaagacgtcgggcggcaagggcgtccacatcgtcgtgccgaccacg
aaaaagctgacctggaagcaggcccacgccgcctgtgcgacgatcgcggtggccttggcc
aagacgggcaaggacaccttcaccaccacgatgggcgaacagaaccgcaagggccgcatc
ttcatcgactatcaccgcaatgccaggagcgcgaccgccgtcgccgcctattcgttgcgg
gcccggccgcacttgccggcatcgaccccaatagactggcgcgatctggagtccatcgac
tctccggaggacctgaattactctactcttccgggtttattaaccacggcaggtgacccc
tgggccgacattaacgagtcagcacgggatctggcgccatga
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