Devosia oryziradicis: JI749_05280
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Entry
JI749_05280 CDS
T09885
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
doy
Devosia oryziradicis
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doy03019
]
JI749_05280 (hrpB)
Enzymes [BR:
doy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JI749_05280 (hrpB)
Messenger RNA biogenesis [BR:
doy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JI749_05280 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_30
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QQR37029
LinkDB
All DBs
Position
complement(1037939..1040392)
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AA seq
817 aa
AA seq
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MSLPPLPIDDALPALREALAAGPYAVLVAPPGAGKTTRVPLALLDAPWRQDRRIIMLEPR
RLAARAAASQMARLLGEEVGQTVGYRVRMDSKVTSKTRIEIVTEGVFTRMLLDDPELSEI
AAVLFDEFHERSLDGDLGLALTLDASALRPDLRVLVMSATLDGARVARLLSDAPVIESLG
RAFPVETFYREPDPLQRLEDQVTTAVLAALREHEGSALVFLPGQGEITRVAERLATRVAA
NIDIAPLYGQLTPAEQDRAIRPAEPGRRKVVLATSIAETSLTIDGVRIVVDSGFRRVPVY
EPGTGLTTLATSRISRAGADQRRGRAGRTSPGVAIRLWNEGQNSALEPFDTPEILAADLA
GFALDLANWGVADPGTLPFLDPPPAPAWAEATNLLRALDALDAQGRITPEGKALARLSLH
PRLAHMVVAAAAEDDALTAAELAVLVTERGLGGDGTDLAHRLDRFRTDRSKRADDARALA
RRWAAQASSKKTASNLAASRHLARAYPDRVAQAAGPRGRFRLANGRQASLEETDALATQP
YLVVTDITGTAATARIRGAAALDRTDLEALFAHRITETTTLSFDAASSSVRARRLRQLDA
IRLADDPVPVDDPEAAALLLAEAAARRGIEALPWSREQKAWRARANYLRATLGDAWPDLS
ADALAADAADWLAPALFGLTKLSDISADHLRAALDLLLPYPRRQEIEALLPSHFVAPTGN
AVPIDYGAEGGPAIEIRVQELFGLTRHPSIANGRIPLLLVLLSPAHRPIQTTRDLPGFWA
GSWADVAKDLKGRYPRHPWPDDPAKAAPTARAKPRGT
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgccgccccttcccatcgacgatgccctaccggccctgcgcgaagccctcgct
gccggcccctatgcggtgctcgtcgccccaccgggcgccggcaagaccacccgtgtaccc
ctggcactgctcgacgccccgtggcgccaagatcgccgcatcatcatgctcgaaccccgg
cgcctcgccgcccgggccgccgctagccagatggcgcgcctgcttggtgaagaagtcggc
cagaccgtcggctatcgtgtgcgcatggacagcaaggtcaccagcaagacccgtatcgaa
attgtcaccgaaggtgtcttcacccgcatgctgctcgacgaccctgagctgagcgaaatc
gccgcggtcctcttcgacgaattccacgagcgcagcctcgatggcgatctgggcctggcc
ctcaccctcgacgcctcggccctgcgccccgacctgcgcgtcctcgtcatgtcggcgaca
ttggacggcgcccgcgtcgcccgcctcctctccgacgccccggtgatcgaaagccttggc
cgcgccttccccgtcgagaccttctatcgcgaacccgatccgctgcagcgcctcgaagac
caggttaccaccgcggtccttgccgccctgcgcgaacacgaaggctctgccctcgtcttc
ctccccggccagggcgaaataacaagggttgctgagcgcctcgccacccgcgtcgccgcc
aacatcgatatcgccccgctctatggccagctcacccccgccgagcaggatcgtgccatc
cgcccggccgaaccgggccgccgcaaggtggtcctcgcgacctccattgccgaaacctcg
ctgaccatcgatggcgtccgcatcgtggtcgacagcggcttccgccgcgtcccggtttat
gaacccggcaccggtctcaccacgctcgccacatcgcgcatttcccgcgccggcgccgac
caacgccgcggccgcgccggccgcacgagcccaggcgtcgccatcaggctgtggaacgag
ggccagaactcggcgcttgagcccttcgacaccccggaaatcctggcggccgatcttgcc
ggcttcgcgctcgatcttgccaattggggcgttgccgatcccggcaccctgccgtttctc
gatcccccgccagcccccgcttgggcggaggcgacgaacctcctccgcgccctcgatgcg
ctggacgcgcagggccgcatcaccccggagggcaaagccctcgcccgcctttcgctccat
ccccgcctggcccacatggtggtcgccgccgcagccgaagacgatgccctgacggcggcg
gaactggccgtcctcgtcaccgaacgcggcctgggcggcgatggcaccgacctggcccat
cgcctcgatcgcttccgcaccgatcggtccaaacgcgccgacgacgcccgtgccctcgcc
cgccgctgggccgcgcaagcaagcagcaagaaaactgcaagcaatcttgcagcaagccgc
caccttgcccgcgcctaccccgatcgcgtcgcccaggccgctggcccccgcggcaggttc
cgcctcgccaatggccgccaggccagcctcgaggaaaccgacgccctggccacccagccc
tacctcgttgtgaccgacatcaccggcaccgcagccaccgcccgcatccgcggcgccgcc
gccctggatcggaccgatctcgaagccctctttgcccaccgcatcaccgaaaccacgacg
ctgagcttcgacgcggcctcgtccagcgtccgcgccaggcgtctccgccagctcgacgcc
atcaggctcgccgacgatcccgtgcccgtcgacgacccggaagccgccgccctgctcctc
gccgaagccgccgctcgtcgcggcattgaagccctgccctggagccgcgagcagaaggcc
tggcgcgcccgcgccaattacctgcgcgcgacgctgggtgatgcgtggcccgatctctcg
gccgacgctcttgccgccgacgccgccgactggctggcgccagccctcttcggcctcacc
aagctctccgacatttcagccgaccacctgcgcgctgcgctcgacctgctgctgccctat
ccgcgcaggcaggaaatcgaagcgctgctgcccagccactttgtggcgccaaccggcaat
gccgtccccattgactacggggcagagggcggcccggcgatcgagatccgcgtgcaggaa
ctgttcggccttacccgccaccccagcattgccaatggccgcattcccctgctgctggtg
ctgctctctcccgcgcaccggccaatccagacgacccgcgacctgcctggtttctgggct
ggctcatgggccgacgtcgccaaggatctcaagggccgctacccccgccacccctggccc
gacgacccggcaaaggccgccccaacggcgcgggcaaagccgcggggaacctga
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