Devosia oryziradicis: JI749_06205
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Entry
JI749_06205 CDS
T09885
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
doy
Devosia oryziradicis
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
doy03021
]
JI749_06205 (rpoH)
Transcription machinery [BR:
doy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JI749_06205 (rpoH)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_11
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QQR37201
LinkDB
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Position
complement(1236179..1237048)
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AA seq
289 aa
AA seq
DB search
MAQTNLPVLSSEGGLSRYLQEIRKFPMLEPDEEYMLAKRYKEHQDPGAAQKLITSHLRLV
AKIAMGYRGYGLPISEVISEGNVGLMHAVKRFEPEKGFRLATYAMWWIRAAIQEYVLRSW
SLVKIGTTAAQKRLFFNLRKVKGQIAALDDGSLHPDQIKQIATTLNVTEDDVVSMNARLS
GDASLNSPMRADEGSSEWQDWLVDDTPSAETSLGESQEFSERMGLLTSAMDVLNERERAI
FQARRLQDNPATLEELAQQYDVSRERIRQIEVRAFEKVQDAVKEAAAAH
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggcccagaccaatttgccggtcctctcctccgaagggggcttgagccgttatcttcag
gaaatccgcaagttccccatgctggaaccggatgaagaatacatgctcgccaagcgctac
aaggaacatcaggatcccggcgcggcacagaaactcatcaccagccatctccgcctcgtg
gccaagatcgccatgggctatcgcggttatggcctgcccatctccgaagtgatctcggaa
ggcaatgtcggcctcatgcatgcggtcaagcgcttcgagcccgaaaagggcttccgcttg
gccacctatgccatgtggtggatccgcgccgccatccaggaatatgtgctgcgcagctgg
agcctggtcaagatcggtaccaccgctgcccagaagcgcctgttcttcaacctgcgcaag
gtgaagggccagatcgccgccctggacgatggttcgctacaccctgaccagatcaagcag
attgccaccacgctcaacgtgaccgaagacgatgtggtgtcgatgaatgcccgcctctcg
ggtgatgcgtcgctcaactcgccgatgcgcgccgatgaaggttcgtccgaatggcaggac
tggctggtcgacgacacccccagcgccgagacgagcctgggcgagtcgcaggaattttcc
gagcgcatgggtcttctgaccagtgccatggatgtgctgaacgagcgcgagcgcgccatc
ttccaggctcgccgcctgcaggacaatccggcaacgctcgaggaactggcccagcagtac
gatgttagccgcgagcgcatccggcagatcgaggtccgcgccttcgaaaaggtgcaggac
gcggtcaaggaagccgctgccgcccactga
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