Devosia oryziradicis: JI749_07275
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Entry
JI749_07275 CDS
T09885
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
doy
Devosia oryziradicis
Pathway
doy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI749_07275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doy03019
]
JI749_07275
Enzymes [BR:
doy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JI749_07275
Messenger RNA biogenesis [BR:
doy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JI749_07275
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QQR37773
LinkDB
All DBs
Position
1449983..1451653
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AA seq
556 aa
AA seq
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MSGFEPAPARYLPYRPIAPVDPPFPREWRFARCTVLRARKRPIGAERRVHLNDFISLGLP
TILTDSLTAGGFTEPTKIQAQAIPKLLEGRDMMGIAQTGSGKTAAFGLPILAGILTLNGR
PRPLTTRALILAPTRELAVQIDENLRKFAGSKMKLDTVLLLGGVSRYHQVKRLERGVDIT
VATPGRLKDLMDDGKIRLNETRWLVLDEADRMLDMGFIAPVRHIVKAIGIKRHTMMFSAT
MAPDVADLAKSLLQDPVRVDASVAGSTVVKIDQRVILSGAKAKRGVLNELLASTEENMER
VIIFSRTKHGADRVAKNLEIDGHKAAAIHGNKSQNARQAALKGFATGDVRILVATDIAAR
GIDVPGITHVVNYELPDDPENYVHRIGRTGRNGASGTAITLCDGTERGKLRDVERLIRRT
LPVSGDLHTGNDTGVVEAPRSAYKKPSGGRPGPRSAKNPRKDQTDRRSPAERRPFAEFAK
EVGSKSQPHHQPSDTPRSRPAAEGVRGRPDAPRTRPVEGKPVAAKPAAGKQRWGKAQKDA
VRSGGRSNADRQRGRA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggttcgagccagcacccgcgcgatatctcccttatcgcccgattgcacctgtt
gatccgccgttccccagggaatggcgatttgcgcgctgcactgttctgcgcgctcgcaag
cgccctatcggcgcagaaagacgtgtacacttgaacgactttatttccctcggcctgccg
accattctcaccgacagcctgactgccggcggcttcaccgagcccaccaagatccaggcc
caggccattcccaagctcctcgagggccgggacatgatgggcatcgcccagacgggttcg
ggcaagacggctgccttcggcttgccgatccttgccggcatcctgaccctcaatggccgc
ccgcggccgctgaccacccgtgcgctgatcctggcgccgacccgcgagctggcggtgcag
atcgacgagaacctgcgcaagtttgccggctccaagatgaaactcgataccgtgctgctg
ctgggcggcgtgtcgcgctaccaccaggtcaagcgcctcgagcgcggcgtcgacatcacc
gtcgctaccccgggtcgcctgaaggacctgatggacgacggcaagatccgcctcaacgaa
acccgctggctggtcctggacgaagctgaccggatgctcgacatgggcttcattgccccg
gtgcgccacatcgtcaaggcgatcggcatcaagcgccatacgatgatgttctcggccacc
atggcccctgatgtcgccgacctcgccaagagcctgctgcaggatccggtgcgcgtggat
gcttcggttgccggttccaccgtggtcaagatcgaccagcgcgtcatcctctcgggcgcc
aaggccaagcgcggcgtgctcaacgaactgctggccagcaccgaagagaatatggaacgc
gtgatcatcttctcgcgtaccaagcatggtgccgaccgtgtcgccaagaatctggagatc
gacggccacaaggctgctgccatccatggcaacaagagccagaatgcgcgccaggcggcc
ctcaagggctttgccaccggcgacgtgcggatcctcgtcgccaccgatatcgcggcgcgt
ggcatcgacgtgccgggcatcacccatgtggtgaactatgaactgcccgacgatccggag
aactatgtccaccgcatcggccgcaccggccgcaacggcgcatccggcacggcgattacc
ctgtgcgatggcaccgagcgcggcaagctgcgcgacgtggaacgcctgatccgccgtacg
ttgccggtctctggtgacctccataccggcaacgacaccggcgtcgtcgaggcgccgcgt
tcggcctacaagaagccttcgggcggtcgtccgggcccgcgctcggccaagaacccgcgc
aaggaccagaccgaccgccgctcgccggccgagcgtcgaccgttcgccgaattcgccaag
gaagtcgggagcaagagccagccgcatcaccagccgtccgatacgccgcgcagccgcccg
gctgcggagggcgttcgtggccggcccgatgcgccgcgcacccgtccggtcgagggcaag
cctgtggctgccaagcccgctgccggcaagcaacgctggggcaaggcgcagaaggatgcg
gtgcgcagcggcggccggtccaatgccgatcgccagcgcggccgtgcataa
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