Devosia oryziradicis: JI749_07410
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Entry
JI749_07410 CDS
T09885
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
doy
Devosia oryziradicis
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
doy03032
]
JI749_07410
03400 DNA repair and recombination proteins [BR:
doy03400
]
JI749_07410
Enzymes [BR:
doy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JI749_07410
DNA replication proteins [BR:
doy03032
]
Prokaryotic type
DNA Topoisomerases
JI749_07410
DNA repair and recombination proteins [BR:
doy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JI749_07410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QQR37428
LinkDB
All DBs
Position
1479590..1480588
Genome browser
AA seq
332 aa
AA seq
DB search
MRLIKIGRKDLTLVRQRSGKGFCYRDADGALVSDEPTRARIKALGIPPAWREVRIAAHPR
AHIQVLGVDEAGRDQYIYHPDWEVRRDSKKQKRLAALTAALPRLRRRIEAGLAAEAGSRA
LALNIAVALIDRTAMRVGREKYLETSGTRGAGTLYSRDARVNGDEVCFTFDAKGGKRAQY
CLTDARLADAIRRIQALPGKRLLVWRDETGTVRPIKTEAINAYLRELAGTEISAKDFRTL
HASALAAEALAGMEVGKSETARRRQMGEVARHVAEVLRNTPAISRKSYIAPCLFKLFDTG
KLKPMWEAAGRGGAPGLLQREKRLGAVLAAVG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctcatcaagatcggccggaaggacctgaccctcgtgcgccagcgcagtggcaag
ggattctgctaccgcgacgcggacggcgccctggtgtcggacgaaccgacgcgcgcacgc
atcaaggctctgggtattcccccggcctggcgcgaagtgcggattgccgcccatccgcgg
gcgcatatccaggtactcggtgtcgatgaagccggccgcgaccagtatatctatcatccg
gattgggaagtgcgccgcgacagcaagaagcagaagcggttggcggcgctgaccgcggct
ctgccgcgcctgcgccgcaggatcgaggcgggactggccgccgaggcgggcagccgggcg
ctggcgctcaacatcgccgtggccttgatcgaccgcacggccatgcgcgtcggtcgcgaa
aaatatctcgaaaccagtggtacgcgcggcgccggcacgctctattcgcgtgatgcgcgg
gtcaatggcgatgaagtctgcttcaccttcgacgcaaagggtggcaagcgggcccagtat
tgccttaccgatgccaggctcgccgatgccatccgacgcattcaggcgcttccgggcaag
cgcctgctggtgtggcgcgacgagaccggtaccgtgcggccgatcaagaccgaggcgatc
aacgcctatctgagggaactcgccggcaccgagatttccgcaaaggatttccgcacgctg
catgccagcgcgctggcggccgaggctttggccggcatggaggtgggcaagtccgagacc
gcgcgccgtcgccagatgggcgaggtggcgcggcatgttgctgaagtcctgcgcaacacg
cccgccatttcgcgcaagtcctacatcgcgccatgcctgttcaagctgttcgataccggc
aagctcaagcccatgtgggaagcggcggggaggggcggcgcacccgggctgttgcagcgg
gaaaagcggctgggcgccgtgctggcggctgtgggctag
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