Devosia oryziradicis: JI749_07930
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Entry
JI749_07930 CDS
T09885
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
doy
Devosia oryziradicis
Pathway
doy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JI749_07930 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
doy03021
]
JI749_07930 (rpoD)
Transcription machinery [BR:
doy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JI749_07930 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UPF0240
IZUMO
DUF16
Motif
Other DBs
NCBI-ProteinID:
QQR37526
UniProt:
A0ABX7C6C7
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All DBs
Position
1577116..1579185
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AA seq
689 aa
AA seq
DB search
MATKAAPKTTKETEKPEAGAPEATNDSPLLDLSDAAVKKLIKVAKKRGYVTYEELNAVMP
SDEVSSEQIEDFMSMFSDMGINVVDEDEVEETEVEKDDEDQGQEVAQSGSTAVSTTSNTK
AGSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIEGLCESPLTFQAIIIWR
EQLAQGEILLRDIIDLEATYAGPDAKQAAPAPDMVSLNAAPKMETVVEKPKPAPAPKRAS
SGDEDDDYVPEEPQAPQDPVEEDDDEFENALSLSAMEAELKPQVVETFDRIANAYGQMRE
MQDKHAEDRSASVSDADNKKLDVLRSEVIADVKSLSLNASRIESLVEQLYDINKRLVKLE
GRLLRLAESYGVKREKFLESYYGQEVNPAWEANLADFEGKGWGEFAKREADTIREIRGDV
ATLATETGLNIAEYRRIVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIV
RTSRQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIQ
DVNAIQPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTR
ERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcagcaccgaagaccaccaaggaaaccgagaagccggaagccggcgcc
ccagaggcgacgaatgacagcccgctgctcgacctttccgacgccgccgtaaagaagctc
atcaaggtcgccaagaagcgcggctatgtgacctatgaagagctgaacgcggtgatgccg
tcggacgaggtgtcgtccgaacagatcgaggatttcatgtccatgttctccgacatgggc
atcaacgtcgtcgacgaggacgaggtcgaagagaccgaagtcgagaaggacgatgaagac
cagggtcaggaagtggcccagtccggcagcaccgccgtttccacgacctccaataccaag
gccggctccgatcgcacggacgacccggtgcgcatgtatctgcgcgagatgggttcggtc
gaactgttgagccgcgaaggcgaaatcgccatcgccaagcgcatcgaggccggtcgcgag
accatgatcgaaggcctctgcgagtcgccgctgaccttccaggccatcatcatctggcgc
gaacagctcgcccagggcgaaatcctgctgcgcgacatcatcgacctcgaagccacctat
gccggtcccgatgccaagcaggcggctcctgcgccggacatggtcagcctcaacgctgcc
ccgaagatggaaaccgtcgtcgaaaagcccaagccggccccggcgcccaagcgcgcctcg
tcgggcgacgaggatgacgactacgttcccgaggagccgcaggcgccgcaggatcctgtc
gaggaagacgacgacgagttcgagaacgctttgtcgctgtcggccatggaagccgagctc
aaaccgcaggtggtcgagaccttcgaccgcatcgccaatgcctatgggcagatgcgcgaa
atgcaggacaagcatgccgaagaccgttcggcctcagtgtcggatgccgataacaagaag
ctcgacgtactgcgcagcgaggtcattgccgacgtcaagtcgctgtcgctcaatgccagc
cgtatcgagagcctggtcgagcagctctacgacatcaacaagcgcctggtgaagctggaa
gggcgcctcctgcgcctcgccgaaagctatggcgtcaagcgcgagaagttcctcgagagc
tattacggccaagaagtgaacccggcctgggaagccaaccttgccgatttcgagggcaag
ggctggggcgaatttgccaagcgcgaagccgataccatccgcgaaatccgtggcgacgtg
gcgacgctggccaccgaaaccggcctcaacatcgccgaataccgccgtatcgtgcacaag
gtgcagaagggcgagcgcgaagccgccatcgccaagaaggagatggtcgaggccaacctg
cgcctcgtgatttccattgccaagaagtacaccaatcgcggcctgcagttcctcgacctg
atccaggaaggcaatatcggcctgatgaaggccgtcgataagttcgaatatcgccgcggc
tacaagttctcgacctatgccacctggtggatccgccaggcgatcacccgctcgatcgcc
gaccaggcccgcaccatccgcattccggtgcacatgatcgagacgatcaacaagatcgtc
cgcaccagccgccagatgctgcatgaaatcggccgcgaaccgacccccgaggaactcagc
gaaaagctgcagatgcccttggacaaggtccgcaaggtgctcaagatcgccaaggaaccc
atctcgctcgaaaccccgatcggcgacgaggaagattccaacctgggcgatttcatccag
gacgtgaacgcgatccagccgatcgacgcggcgatccagagcaatctgcgcgaaaccacg
acccgcgtgctggcgtcgctgacgccgcgcgaggaacgcgtgctgcgcatgcgcttcggc
atcggcatgaacacggaccacacgctggaagaagtcggccagcagttctcagtcacccgc
gaacgcatccgccagatcgaagccaaggccctgcgcaagctcaagcacccgagccgctcg
cggaagctgcggagcttcctggataactag
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