Devosia oryziradicis: JI749_10710
Help
Entry
JI749_10710 CDS
T09885
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
doy
Devosia oryziradicis
Pathway
doy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JI749_10710 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
doy03021
]
JI749_10710 (rpoB)
03400 DNA repair and recombination proteins [BR:
doy03400
]
JI749_10710 (rpoB)
Enzymes [BR:
doy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JI749_10710 (rpoB)
Transcription machinery [BR:
doy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JI749_10710 (rpoB)
DNA repair and recombination proteins [BR:
doy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JI749_10710 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
IbrB_C
KorB
Motif
Other DBs
NCBI-ProteinID:
QQR34852
UniProt:
A0ABX7BSC9
LinkDB
All DBs
Position
2142079..2146224
Genome browser
AA seq
1381 aa
AA seq
DB search
MATTFNGRRKVRKSFGSIREVTEMPNLIEVQKASYDQFLLVDEPKGGRPDEGLQSVFRSV
FPITDFSNTASLEFVKYEFEQPKYDIEECRARDITFAAPLKVTLRLIVFEVDEETGARSV
KDIKEQDVYMGDMPFMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAG
RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLKALGMDAEEILRTYYNTLAYEKTD
KGWRVPYDADKWKGAKPTHDLIDAKTGDVVHEGGKKLSARQAKKLAENGLTHLLAVTEDL
YGMYIAEDLVNLKTGEIYAEAGDELDEKVLTKLVDLGFDELPILDIDHITIGAYIRNTLA
VDKNETREDALFDIYRVMRPGEPPTVDTAEAMFQSLFFDSERYDLSAVGRVKMNMRLELD
APDTMRTLRKEDIVEVVRTLVDLRDGRGEIDDIDNLGNRRVRSVGELMENSYRLGLLRME
RAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYR
KIVDGKLTNEVVYLSAMEEAKHYVAQANVQFNKDGTLKDDLVVARHAGDNGLTPKENVDL
MDVSPKQMVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAHAPFVGTGMEAVVARDS
GAAIVAKRKGIVDQVDATRIVIRATEETDASKSGVDIYNLMKFQRSNQSTCINQRPLVVV
GDHVNAGDIIADGPSTELGDLALGRNVLVAFMPWNGYNFEDSILLSEKIAMQDVFTSIHI
EEYEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVHIGAEVAPGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGDAGTVVEVRVFNRHGIDKDERAMAIEREEI
ERLAKDRDDEQSILDRNVYARLKEMLFGKAATAGPKGYVVGTKLNDQMFEAQPRSKWWQF
AVDDDKVMTEMEALHAQYEESRRLLEQRFIDKVDKLQRGDELPPGVMKMVKVFIATKRKI
QPGDKMAGRHGNKGVVSRIVPVEDMPYLEDGTSVDIVLNPLGVPSRMNVGQILETHLGWA
CAGMGKKIDEMVRIYQQKGDLKPLRKEIGELFDGDETVTDLDDDGLIRLGEHLSKGVSIA
TPVFDGAKEADIVTMLERAGLKGSGQSTVYDGRTGEQFDRQVTVGYIYMLKLDHLVDNKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTIKSDDVAGRTK
VYEAIVRGDDTFEAGIPESFNVLVKEIRSLGLNVELDMRDVGGDDTGQAEAELAPPQEAA
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgttcaacggccgccgcaaggtacgcaagtccttcggttccattcgcgaa
gtcacggagatgcccaacctgatcgaggttcagaaggcctcctatgatcagttcctcctc
gtggacgagcccaagggtggccgtcccgatgaagggcttcaatccgtcttccgttcggtt
ttcccgatcaccgacttttccaacacggcatctctcgaattcgtgaagtacgaattcgag
cagcccaagtacgacatcgaagagtgccgtgcgcgcgacatcacgttcgctgccccgctc
aaggtgacgctgcggctgattgtgttcgaagtggacgaggaaaccggcgcccgctcggtc
aaggacatcaaggagcaggacgtctatatgggcgacatgcccttcatgacgtcgaacggc
accttcatcgtcaacggcaccgagcgcgtcatcgtttcgcagatgcaccgctcgcctggc
gtgttcttcgaccacgacaagggcaagacccactcgtccggcaagctgctgttcgccggc
cgcataattccgtatcgcggttcgtggctcgatatcgaattcgacgccaaggacatcgtc
tatgcgcgcatcgaccgccgccgcaagatcccggtgacgtcgctgctcaaggccctcggc
atggatgccgaggaaatcctgcgcacctactacaacacgctcgcctacgagaagaccgac
aagggctggcgcgttccctacgatgccgacaagtggaagggcgccaagccgacccacgac
ctgatcgacgccaagactggtgacgtcgtccatgaaggtggcaagaagctcagtgctcgc
caggccaagaagctggctgagaacggcctgacgcacctgctggccgttaccgaagatctc
tacggcatgtacatcgccgaggacctggtcaatctcaagaccggtgagatctacgccgag
gccggcgacgagctcgacgaaaaggtgctgaccaagctggttgacctgggcttcgacgag
ctgccgatcctcgacatcgatcacatcacgatcggtgcctacatccgcaacacgctggcc
gtggacaagaacgagacccgcgaagatgcgctgttcgatatctaccgcgtcatgcgcccg
ggcgagccgccgaccgtcgacacggccgaagccatgttccagtcgctgttcttcgacagc
gagcgctatgacctgtctgcagtcggccgcgtcaagatgaacatgcgtctcgagctcgat
gcgcccgacaccatgcgcaccctgcgcaaggaagacatcgtcgaggtcgtccgcaccctg
gtcgacctgcgcgatggccgcggcgaaatcgacgacatcgacaacctcggcaaccgtcgc
gttcgctccgtcggcgaactcatggaaaactcctatcgccttggcctgctccgcatggag
cgcgccatcaaggagcgcatgagctcggtggaaatcgacaccgtgatgccgcaggacctg
atcaacgccaagccggctgctgctgccgtgcgtgagttcttcggttcctcgcagctgtcg
cagtttatggaccagaccaatccgctgtcggaaatcacccacaagcgtcgcctttcggcg
cttgggccgggtggtctcacccgcgagcgcgcgggcttcgaagtccgcgacgtgcatccg
acccactatggccgcatctgcccgatcgagacgccggaaggccccaatatcggtctgatc
aactcgctgtcgacctttgcccgcgtcaacaagtacggtttcatcgagaccccgtaccgc
aagatcgtggacggcaagctgaccaatgaagtggtttacctctccgccatggaagaggcg
aagcactacgtcgcccaggcaaacgtccagttcaacaaggacggcacgctcaaggacgac
ctggtcgtggcgcgccatgctggtgacaacggcctgaccccgaaggaaaacgtcgacctg
atggacgtttcccccaagcagatggtgtcggttgctgcctcgctgatcccgttcctcgag
aacgacgacgccaaccgtgctctgatgggctcgaacatgcagcgtcaggccgtgccgctg
ctgcgcgcccatgcgcccttcgtcggcaccggcatggaagctgtcgtggcgcgtgactcg
ggcgctgccatcgtcgcaaagcgcaagggcatcgtcgaccaggtggacgccacccgtatc
gttattcgcgcaacggaagaaaccgatgcgtcgaagtcgggcgtggacatctacaacctg
atgaagttccagcggtcgaaccagtcgacctgcatcaaccagcgtccgctggtggttgtg
ggtgaccatgtcaacgccggcgacatcatcgccgacggcccgtcgaccgaactgggcgat
ctggccctgggccgcaacgtgctcgtcgcgttcatgccctggaatggctacaacttcgaa
gactccatcctgctcagcgaaaagatcgcgatgcaggacgtcttcacctcgatccacatc
gaggaatatgaagtgatggcccgcgacaccaagctcggtccggaagaaatcacgcgcgac
attccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtccatatc
ggcgctgaagtggcaccgggcgacattctggtcggcaagatcacccccaagggtgaatcg
ccgatgacgccggaagaaaagctcctccgcgccatcttcggcgagaaggcctccgacgtt
cgtgacacctccctgcgcgtgccgccgggcgatgctggtactgtcgttgaagtgcgcgtg
ttcaaccgccacggcatcgacaaggacgagcgcgccatggccatcgagcgcgaggaaatc
gaacgcctcgccaaggaccgtgacgacgaacagtcgatccttgatcgcaacgtctatgcg
cgtctcaaggaaatgctgttcggcaaggcggctacggctggcccgaagggctatgtcgtg
ggcaccaagctcaacgaccagatgttcgaggcccagccccgttcgaagtggtggcagttc
gcggtcgatgacgacaaggtcatgaccgagatggaagctcttcatgctcagtatgaagag
agccgccgtctgctcgagcagcgcttcatcgacaaggtggacaagctgcagcgcggtgac
gaacttccgccgggcgtgatgaagatggtcaaggtcttcatcgcaacgaaacgcaagatc
cagccgggcgacaagatggccggccgtcacggcaacaagggcgtggtttcgcgcatcgtt
ccggtggaagacatgccgtatcttgaagacggtacgtcggtcgacatcgtgctgaacccg
ctgggcgtgccgtcgcgcatgaatgtgggccagatcctcgagacgcacctgggctgggct
tgcgccggcatgggcaagaagatcgacgagatggtccgcatctaccagcagaagggcgac
ctcaagccgctccgcaaggaaatcggcgagctcttcgatggtgacgagacggttaccgat
ctggacgacgacggcctgatccgccttggcgaacacctctccaagggcgtgtcgatcgcg
accccggtgttcgacggtgccaaggaagccgatatcgtcacgatgctggaacgtgccggg
ctcaagggttcgggccagtcgaccgtttatgacggccgtaccggcgagcagttcgatcgc
caggtgaccgtgggctatatctatatgctcaagctcgatcacctggtggacaacaagatc
cacgcccgctcgatcggcccgtactcgctggtcacccagcagccgctgggcggcaaggcc
cagttcggcggtcagcgcttcggcgagatggaagtgtgggctctggaagcttatggcgcg
gcttatacgctccaggaaatgctcaccatcaaatcggacgacgttgctggtcgtaccaag
gtctacgaagccatcgttcgcggcgacgacacgttcgaagcgggcatccccgagagcttc
aacgttctggtgaaggaaatccgctcgctcggtctcaatgtcgaactcgacatgcgcgac
gtgggcggggacgacaccggccaggccgaagcggagctcgcacctcctcaggaagcggcg
gaataa
DBGET
integrated database retrieval system
