Devosia oryziradicis: JI749_11880
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Entry
JI749_11880 CDS
T09885
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
doy
Devosia oryziradicis
Pathway
doy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI749_11880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doy03019
]
JI749_11880
Messenger RNA biogenesis [BR:
doy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JI749_11880
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QQR35075
UniProt:
A0ABX7BSZ8
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Position
complement(2364766..2366439)
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AA seq
557 aa
AA seq
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MAKNQRDELVFVPLGGVGEIGMNMGAYGFGPERSRKWIVVDCGVTFGGPDLPGIELIMAN
PEFLEERADDVLALILTHSHEDHYGAVLDLWPGFEKPVFCTPFTAAMLAAKRAGDGIVEN
VDVTIMRPGKPFEVGPFTIEAINVAHSIPESNALLITTPIGRVLHTGDWKLDPTPVGNAP
TDVARLQKIGEDASTPLALICDSTNALKDGESPSEAEVAANLAAMIAESPNRVAVTTFAS
NVGRVISIVRAAEKAGRQVVMSGRSLHRIMGIAKELGMLEGLPPLLDQDAYKTIARNKIV
LICTGSQGEARAAIARIARGEHPVIDLNAGDRMIFSSWAIPGNEREVIDIQNMLIDKGVE
VITANDGLVHVTGHPRRDELRKLYGWVKPEVLVPVHGEATHLQAHAKLGRDSGVPNVIDA
RNGDLVRLFPEPLAFPAEVRTGELYLDGLVLCTPEESGVKGRRRLSFGGHVVVSLCVNGG
GQVVSGPDLVIEGLPETEDESLGELVEDTIAGVIKSMPPKRRSDTEVLNSALFKAIRNEV
NAYWGRKPNVSVFVHRV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaaccaacgggatgaactcgtcttcgtgccgcttggcggcgtcggcgagatc
ggcatgaatatgggcgcctacggctttgggccggaacgctcgcgcaagtggatcgtggtc
gattgcggcgtcacgttcggcgggcccgacctgccgggcatcgaactcatcatggccaac
cccgaatttctcgaggaacgcgccgatgatgtgctggcgctgatcctcacccacagccac
gaagatcactatggcgctgtgctcgacctctggccgggcttcgagaagccggttttctgc
acgccgttcacggccgccatgctggccgcgaagcgggcaggggatggcatcgtcgaaaat
gtcgacgtcaccattatgcgcccgggcaagccattcgaggtcggccccttcaccatcgag
gcgatcaacgtcgcgcactcgataccggaatcaaatgcgctgctgatcaccacgcctatt
ggtcgggtgctgcacaccggcgactggaaactcgaccccacccctgtcggcaatgcgccc
accgatgtggcgcgcctgcagaagatcggcgaggacgcctcgaccccgctcgctctgatc
tgcgactccaccaacgcgctaaaggacggcgaaagcccgagcgaggccgaagttgcggcc
aatctggcggccatgatcgcagaatcgcccaatcgcgtggcggtcaccaccttcgcgtcc
aatgtcgggcgggtcatctccatcgtgcgcgccgcggaaaaagctggccgccaggtggtg
atgtccggccgttcgctgcaccgcatcatgggcatcgccaaggaactcggcatgctcgag
ggtctgccgccgctgctcgaccaggacgcctataagaccattgcgcgcaacaagatcgtg
ctgatctgcaccggcagccaaggtgaggctcgagccgccatcgcccgcattgcccgcggc
gagcatccggtgatcgatctcaatgccggcgaccgcatgatcttctcgtcctgggccatt
ccgggcaacgaacgcgaagtcatcgacatccagaacatgctgatcgacaagggcgtcgag
gtcatcaccgccaatgacggcctggtgcacgtcacaggccatccccgccgcgatgaactg
cgcaagctctatgggtgggtgaagcccgaagtgctggtgcccgtccatggcgaagcaact
catctgcaggcccacgccaagcttggccgggattccggtgttcccaatgtcattgacgcg
cgcaatggtgatctggtgcgcctgttccccgaaccgctggctttcccggcagaggttcgc
acgggcgagctctatctcgatggcctcgtcctctgcactccagaagaatctggggtgaag
gggcgccgccgcctgtcctttggcggccatgtcgtggtcagcctttgcgtcaatggggga
ggccaggtcgtgtctggtcccgatctcgtgatcgaggggctgcctgagactgaggacgag
tcgctgggcgagctggtcgaagacaccattgccggcgtcatcaaatccatgccgcccaag
cgccgcagtgataccgaggtcctgaactcggcactgttcaaggctattcgcaacgaggtg
aatgcctattggggccgcaagcccaacgtctcggttttcgtgcaccgggtctag
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