Devosia oryziradicis: JI749_12215
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Entry
JI749_12215 CDS
T09885
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
doy
Devosia oryziradicis
Pathway
doy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI749_12215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doy03019
]
JI749_12215
03009 Ribosome biogenesis [BR:
doy03009
]
JI749_12215
Enzymes [BR:
doy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JI749_12215
Messenger RNA biogenesis [BR:
doy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JI749_12215
Ribosome biogenesis [BR:
doy03009
]
Prokaryotic type
rRNA processing factors
JI749_12215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QQR35134
LinkDB
All DBs
Position
2439359..2441980
Genome browser
AA seq
873 aa
AA seq
DB search
MATKRMLVDAIHPEETRIVVTAGNRIEEFDFESAQRQQLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADREALLRDEEAEDHHEEAEEHISVPEGVTEPDAEA
DPQETDDASHIEQAPANAEPVESIGGADALEEVPERRRQSPNRRHYKIQEVIKRRQVMLV
QVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAADRKRLKEITSDLEVP
QGMGVILRTAGASRTKAEVKRDFEYLMRLWESVRSLTLKSQAPCLVYEEGSLIKRTIRDL
YNKDIDEVFVAGDDAFREAKDFMKMIMPSHAKNVQLYKEDQPLFSKYGIEQQLDSMFSPT
VTLPSGGYIVINPTEALVSIDVNSGRSTKEHNIEDTALQTNLEAAEEVARQLRLRDLAGL
IVIDFIDMMENRSNRAVERKLKDCLKDDRARIQVGRISHFGLMEMSRQRIRFGVVESSTH
KCPVCDGTGLVRSTESLALMIMRHIEDHVLRRQGQSINVRVPVEVALYILNFKRETLTAL
EIRNQLSITITADGKMTGHQFAIEKGEARVMAYAEQRATEHVRVDSAVIDDEVEEEDVVE
ESEDEEAEARPAAGENGEGEGRRRRRRRRRGGADRGDERPQQQRAAQAPSVEAEVGDEDG
EGDEEENPARPSGEARGDEEPRKRRRRGRRGGRRNRRDGDENGAEKAPSPAGDVGLTVSE
TSAVAGELLAQDEIVAAEPAVAEAAPVEKPKRTRRKKVEETAEGTPVDAAPVEAPPEAEI
VANEKPKRKPRARKPKAETTEAVAAASVSEAAPAPEPAAAEATEAPKPRRAKKELPAEGI
VVSSSAPKAEAEGEAGEAPKKKAGWWQRRLGLG
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaagagaatgctggtggatgccatccacccggaagaaacacggatcgtcgtt
accgcaggtaaccggatcgaggagttcgacttcgaatcggcccagcgtcagcagttgcgg
ggcaatatctacctcgccaaggtgacgcgcgtagagccctccctccaggcggccttcgtc
gaatatggcggcaatcgccacggtttcctcgctttcagcgaaatccaccccgactactac
cagatccccgtcgccgaccgcgaagccctgctgcgcgatgaagaggccgaggatcaccac
gaggaagccgaagagcatatttcggttcccgaaggcgtgaccgagcccgacgccgaggcc
gatccccaggaaaccgacgacgccagccacatcgagcaggccccggccaatgccgagccc
gtcgaatcgatcggcggggcagacgcgctcgaggaagtgcccgagcgtcgccggcagagc
ccgaaccgtcgtcactacaagatccaggaagtgatcaagcgccggcaggtcatgctggtg
caggtggtcaaggaagagcgcggcaacaagggcgcagcgctcaccacctacctgtcgctg
gccggccgctattcggtcctgatgcccaataccgcccgtggcggcggcatctcccgcaag
atcaccaatgccgccgatcgcaagcgcctcaaggagatcacgtccgatctcgaagtgccc
cagggcatgggcgtgatcctgcgcaccgccggtgcctcgcgcaccaaggccgaggtgaag
cgcgatttcgaatacctgatgcgcctgtgggaaagcgtacgctcgctgaccctcaagtcg
caggccccgtgcctggtctatgaggaaggctcgctgatcaagcggaccatccgcgacctc
tacaacaaggacatcgacgaagtcttcgtggcgggtgatgacgccttccgcgaggcgaag
gacttcatgaagatgatcatgccgagccacgccaagaacgtgcagctctacaaggaagat
cagccgctcttctccaagtacggcatcgagcagcagctcgactcgatgttctcccccacg
gtgaccctgccctcgggcggctacatcgtcatcaacccgaccgaagcgctcgtttccatc
gacgtgaactcgggccgctccaccaaggagcacaatatcgaagacaccgcgctccagacc
aatctggaggccgccgaggaagtcgcccgccagcttcgcctgcgcgatctggcgggcctg
atcgtcatcgacttcatcgatatgatggaaaaccggagcaaccgggccgtcgagcgcaag
ctcaaggattgcctcaaggacgatcgcgcccgcatccaggtcggccggatttcgcacttt
ggcctcatggaaatgagccgccagcgcattcgcttcggcgtcgtcgagagctcgacccac
aagtgcccggtctgcgatggcacgggcctggtccgttcgacggaaagcctggcgctgatg
atcatgcgccatatcgaggaccacgtgctgcgccgccagggccagtcgatcaacgtccgc
gtgccggtcgaggtcgccctctacatcctcaacttcaagcgcgagacgctaaccgcactg
gaaatccgcaaccagctgtcgatcaccatcaccgccgacggcaagatgacgggccaccag
ttcgccatcgagaagggcgaagcgcgcgtcatggcttatgccgaacagcgcgcgaccgag
catgtccgcgtcgacagcgccgtcatcgatgacgaagtcgaggaagaagacgtcgtcgag
gagagcgaggacgaagaagccgaggcacgcccggctgccggtgagaatggcgagggcgaa
ggccgccgccgccgccgccgccgccgccgtggcggtgctgatcgcggcgacgagcgtccg
cagcagcagcgcgccgcgcaggcgcccagcgttgaagccgaagtcggcgacgaggatggc
gagggcgacgaagaggaaaacccggctcgtccatccggggaagcccgtggcgacgaggag
ccgcgcaagcgccgccgtcgtggccgtcgtggcggccgccgcaaccgtcgtgacggcgat
gaaaacggcgccgagaaggccccctcgccggctggcgacgtcggcttgaccgtcagcgaa
acctctgccgttgccggcgaattgctggcgcaggacgagatagtagccgccgaacctgca
gttgccgaggccgcgccggtcgaaaagcccaagcgtacgcgccgcaagaaggtcgaggag
accgcggaaggcacgccggtcgacgccgcgccggtggaagcaccgcccgaagccgagatc
gttgcgaacgaaaagcccaagcgcaagccacgggcccgcaagccaaaggccgaaaccacc
gaagcggtggctgcggcatcggtcagcgaagccgcgccggcgcccgagccagccgctgcc
gaagcgacggaagcgcccaagccgcgccgcgccaagaaggagctgccggcggaaggcatc
gtggtgtcgtccagtgcccccaaggcggaagccgagggcgaagccggtgaggcacccaag
aagaaggccggctggtggcaacgccgcctgggtctgggctag
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