Dolichospermum sp. UKL201: HEP80_06075
Help
Entry
HEP80_06075 CDS
T10192
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
doz Dolichospermum sp. UKL201
Pathway
doz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP80_06075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doz03019
]
HEP80_06075
03016 Transfer RNA biogenesis [BR:
doz03016
]
HEP80_06075
Enzymes [BR:
doz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HEP80_06075
Messenger RNA biogenesis [BR:
doz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEP80_06075
Transfer RNA biogenesis [BR:
doz03016
]
Prokaryotic type
tRNA degradation factors
HEP80_06075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QSV53508
LinkDB
All DBs
Position
1280174..1282543
Genome browser
AA seq
789 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKVLEKKLGCEDEESLEKLQITLDVLEKIGLLVKERGKYRR
VTEEGLIEAKLRCSSKGFCFAIQDSEGSEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLIMERSNHTLLARIKQVEEGFRAVPLDDRLLFELKLQLNSMKLEEAIDHLAHVE
ILRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPDSILDAAAKLPKRLLKA
DLKNRLDLREVFTFTIKSVNSDESVVENAFSVEKTTDDNWRLLFHITDVSHYIQADEALD
REALKRGKSVYLGELLLPMLPAVVIQRCSLVPGSDRLALSFIITINPQSGEVEEWEIQPS
VINVDVAVSQVETAAILAGESSTVAAQVQEKLPDLQTLATAIKQVRLQRGSLQLNLPPSH
NPYYDEGAMGSVVVNDLPGRSLITELVILVNQLMADHLSALGVPSLWRVQGTPDPEDVQE
MLKLAVNLGVELGLDPELEIQPLDYQHLTGAFADSPSEQVLTYLLQDTLKPSLYSITKSS
HFGLALSQYVHITAPLRRYPDILLQRVYHNLLEHGRDRRNTRVKDRINLRHSNCHEEINW
NVLPPELQQELQSDLTRVIVQINDREKEVQEAEADLAGLQKASLMKQRIGEVFPGVITGV
QSYGFFVEIEVPVESPTEGNLANTLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASYR
LGDSCMVQVKSVDYYRQQIDLVTVGADGLPKAMSENTGNEETGDIYPQNQSDSLRGKAIS
FDREPYDQE
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacacttcttgccaattttacagatgataaattagtggctcgt
aaagtcctagaaaaaaaactgggttgtgaggatgaagaaagtctagaaaaactccaaatt
actttggatgtgttggaaaaaatcgggcttttggtgaaggaacgggggaaatatcgccgc
gttaccgaagaaggcttgattgaggctaaactccgttgttctagtaagggcttttgcttt
gcgattcaagatagcgaaggctcagaggatatttacatccgtgaaagtcatttgagcaat
gcctggaatggcgatcgcgttttggtaagagtcctcaaggaaggcagtcgcaggcgatcg
ccggaaggtgaggtgaagttgattatggagcggtctaatcacaccttactcgccagaatt
aagcaggtggaggaaggttttcgggctgtccctttggatgacagattgctgtttgaactg
aaactacaactcaacagcatgaagttggaagaagcaattgatcacttagctcatgtagaa
attcttcgctatcccctcgcacaatatcccccattgggtcgagtagtgcaaattttgggt
agtgatgctgaagccgcagcggatatagatttggtaacttgtaaacatgatttatcccgg
acttttcctgattctatcctcgatgcagcggcaaagttacccaagagactcctgaaagca
gacctgaaaaatcgtctcgatttacgtgaggtttttaccttcaccattaagagtgtcaac
agtgatgagtctgtagttgaaaatgccttcagtgtagaaaaaactactgatgataattgg
cgattattatttcacattacagatgtttcccactatatccaagccgatgaggctctagac
cgggaagccctcaagcggggtaagtcagtgtatttgggagaattactactgccaatgttg
ccagcagtggtgatacaacggtgttccttagtccctggtagcgatcgcttggctctctct
tttatcatcaccattaacccccaatcaggagaagtggaggaatgggaaattcaacctagt
gtcattaatgtagatgtagctgttagtcaagtagagacagcagctattcttgccggtgaa
agcagcacagtggcagcccaagtccaagagaaattaccagatttgcagactttggctact
gctattaagcaggtacgtctacagcggggcagcttacagttgaatctcccacccagccac
aacccttactatgacgaaggagcaatgggatcggtggtggttaatgacttacctgggcga
tcgctcattaccgaattggtaatattagttaatcaactcatggctgatcatctcagcgcc
ttgggagttcccagtttatggcgagttcaaggcacacctgatcccgaagatgttcaggaa
atgctcaaactagccgttaatttaggtgtggaattaggacttgatccagaattagaaatc
caacctctagattatcaacacttgacgggagcttttgccgattccccatcggaacaagtt
ctcacctatttattacaagacactctcaagccttctttatatagcattaccaaaagttct
cactttggactagctttatcccaatatgtccacataactgcccccttacgtcgttatcca
gatatcctcttgcaacgggtgtatcataacttactagagcatgggcgcgatcgccggaat
acccgcgtcaaagatcggataaacctgcgccattccaattgtcacgaagaaatcaattgg
aacgttctccccccagaactccaacaagaactgcaaagcgacttaaccagagtcattgtc
caaattaatgaccgagaaaaagaagtccaagaagctgaagctgatttagccggactccaa
aaagcctccttaatgaaacaacgcattggcgaagtatttccaggagtaattactggtgtt
caatcctacggcttctttgtggaaattgaagtcccagtagaatcgcccacagaaggtaat
ctcgctaataccttacgagtagaaggactggttcacgtcagttccctcaaagacgattgg
tatgaatatcgtgccagacaacaagcgttatttgggcgaaaaaatcgggcttcctaccga
ttgggcgatagctgtatggtacaagtcaaaagtgttgattactaccgtcaacaaattgat
ttagtgacagttggtgctgatggtttacctaaagccatgagcgagaatactggcaatgag
gaaacaggagacatttatccacaaaatcaaagcgatagcttgcgtggcaaagccatatct
tttgacagagaaccttatgatcaagaatag
DBGET
integrated database retrieval system
