Dolichospermum sp. UKL201: HEP80_09665
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Entry
HEP80_09665 CDS
T10192
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
doz Dolichospermum sp. UKL201
Pathway
doz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP80_09665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doz03019
]
HEP80_09665
Enzymes [BR:
doz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEP80_09665
Messenger RNA biogenesis [BR:
doz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEP80_09665
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
AAA_22
FANCF
DUF8086
DUF7428
Motif
Other DBs
NCBI-ProteinID:
QSV54107
LinkDB
All DBs
Position
complement(2055870..2057210)
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AA seq
446 aa
AA seq
DB search
MSFSNLGLSPEIVRAVTERGYNQPTPIQKQAIPVVLAGGDIMAGAQTGTGKTASFTLPLL
HRLSANKNVPSHSTGFSPIRALILTPTRELAAQVQESVRDYGKYLNLNSMVMFGGVSIGP
QKQKLRTRIDILVSTPGRLLDHVQQGTVNLSRVEVLVLDEADRMLDMGFINDIRRILALL
PKQRQNLLFFATFSDKVKILAAGLLNNPTMIEVARRNVTAATVSQKVYHVDRDRKRQLLS
HLIQENNWYQVLVFSRTKHGADRLVKQLGEDRIQALAIHGNKSQGARTHALAKFKDGTLQ
VLVATDIAARGLDISELPHVINYDLPNVPEDYVHRIGRTGRAGAEGQAISLVCVDEHHLL
ADIEQLIQQRLPKEVVAGFGVNPEIKAEPIPNGRKAPSGGGNQRTRRSAPKSASSKSPRQ
PSSRTAAGDKKPGSTSPTPRRTGKRR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctaatctcggcttgtccccggaaattgtccgtgctgtcactgagcgcgga
tataatcaacccacaccaatccagaaacaggctattcctgtggtattggctggtggtgat
attatggctggagcgcaaacgggtacaggcaaaactgccagcttcactttgccgctgtta
catcggttatctgcaaataagaacgttcccagtcattctactggattttcaccaattcgg
gcgttaattctgacacctacccgtgaactcgctgcacaggtgcaagaaagtgtccgtgat
tatggtaaatacttaaatctgaattcaatggtgatgtttgggggagttagtattggtccc
caaaaacagaaattgcgaacccgcatagatatcttggtttcaactccaggacgattgtta
gatcatgttcaacaagggacagttaatttatcccgtgtagaagtgttggtactggatgaa
gcagatcgaatgctggatatgggttttattaatgatattcgccgtattctggcactttta
cccaaacaacgccagaatttgctattttttgcgactttctcggataaagttaaaatcctg
gctgctgggttactaaataatccgacaatgattgaagtggcacgtcggaatgtaactgcg
gctacggtatcacagaaagtttatcatgtagaccgcgatcgcaagcggcaattactttct
catctgattcaggaaaataactggtatcaagtattagtgtttagccgcacgaagcatggc
gctgaccggttggtgaagcagttgggtgaagaccgcattcaagcactggctattcacggt
aataaaagtcagggagcgcgaactcacgctttagcaaagttcaaagatgggactttacag
gtattggtagcaacggacattgctgcacgaggtcttgatatcagcgaactacctcacgtt
attaattacgatttacctaatgtcccagaggattatgtgcatcgtattggtcggactgga
cgcgcaggtgcggaaggtcaagcgatttcccttgtatgtgttgatgaacatcatttgtta
gcggatattgagcaactaattcagcagcgtttaccgaaagaggtggtggctggttttgga
gtcaacccggaaattaaggctgaaccaattcccaatggacgcaaagctccttctggtggt
gggaatcagcgcactcgtcgttctgctcctaaatctgcttcttcaaaatcacctagacag
ccttcctcacgcacagcagcaggtgataaaaagcctggttctacttctcctacaccacgt
cgtactggtaaacgtaggtaa
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