Dolichospermum sp. UKL201: HEP80_10115
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Entry
HEP80_10115 CDS
T10192
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
doz Dolichospermum sp. UKL201
Pathway
doz03018
RNA degradation
Brite
Enzymes [BR:
doz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HEP80_10115
Messenger RNA biogenesis [BR:
doz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEP80_10115
Ribosome biogenesis [BR:
doz03009
]
Prokaryotic type
rRNA processing factors
HEP80_10115
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QSV54178
LinkDB
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Position
complement(2141594..2143723)
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AA seq
709 aa
AA seq
DB search
MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLRLKRSAAAITELLTPQQKTLVQVMKEPTGSKGPRLTGNITLPGRYVV
LMPYGRGVNLSRRIKSESERNRLRALAILVKPAGMGLLVRTEAEGKPEEAIIEDLEVLQK
QWELVQQEAVTSRAPALLNRDDDFIQRVLRDMYGGDVNRIVVDSSTGLKRVKQYLQNWSG
GQTPQGLLIDHHRDRSPILEYFRINAAVREALRPRVDLPSGGYVIIQPTEALTVIDVNSG
SFTRSATARETVLWTNCEAAAEIARQLRLRNIAGVIVVDFIDMESRRDQMQVLEHFNKAL
KADKARPQIAQLTELGLVELTRKRQGQNIYELFGETCPTCGGLGHTVRLPGETENRLPIP
AADIPERFVPMPQRESRTPAPTRIPDIGSVAQATPRDTYDGFGDGFETEPEFSSLHLINH
PSYQELNDKRRTRTRRSRIGVNGANDKDESRLPTNPLAFVNDADLDLEEPELPIPEIAPP
TINKSGWTERPERAKVKLEPIKVEPPEIINVEMSAKEQDTFAEMGISPLLKLDREGKNPR
SVIINVVQPGQSPIEETEFIPEPIVMEKTIPEVVTIKIPQPTFELEEESSFPPLAIFPEL
TIVPQVKATETEGKTEIEAEIEAETNNGSTPNRRRRRRSSALDPDVFGL
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattatcatcgcggagcagcatcaaatcgctgctgtattttcagaagat
caaatacaagaactcgttgtagctacgggtcatcaccaaattggtgatatctatttaggt
gtagtagaaaatgtcttacctgggatagatgcggcttttgtcaatatcggcgacccagaa
cgcaacggttttattcacgtcactgatttaggtccattaaggctaaaacgtagtgcagca
gcgattacagaactgttgacaccccagcaaaaaaccttagtgcaggtgatgaaagaacca
acgggatcaaaaggccccagactgacaggtaacatcaccttacctggtcgttatgtcgtg
ttgatgccctacggacggggagtaaatttatcgagacggattaagagcgaaagtgaacgt
aatcgcctgagagctttggcaattctagtaaaaccagccggaatggggctgctggtacgc
acagaagcagaaggcaagccagaagaagcaatcattgaagatttagaagtgctgcaaaag
cagtgggaacttgtgcaacaagaagcagtaacctcccgtgcgccggctctactgaatcgt
gatgatgactttattcagcgcgttctcagggatatgtatggtggtgatgtgaatcgcatt
gttgttgattccagcacgggcttaaaacgggtgaagcagtatttacaaaactggagtggt
ggacaaacaccccaaggattgctaattgatcatcaccgcgatcgctctcctatcttagaa
tatttccggatcaatgcggctgtccgcgaagccctcagaccgagagtagatttaccatca
ggtggttatgtcatcatccaaccgacagaagccttaacggtcatagatgttaactccggt
tcttttactcgttccgcaactgctagagaaacagtgctgtggacaaactgcgaagctgcg
gcggaaattgctcgtcagttacggttgcggaacattgcgggggtgattgtggttgatttt
attgacatggaatctcgacgtgatcaaatgcaagttttagaacactttaacaaagctcta
aaagctgataaagctcgtccccaaattgctcaactgactgaactaggtttggttgaactc
actcgtaaacgtcaaggccaaaacatttatgaattatttggcgaaacttgtcctacttgc
ggcggtttaggacataccgtcagattaccgggagaaacggaaaaccgcttacccattccg
gctgcggacatcccagagcggtttgtaccgatgccacaaagggaatctcggacacctgca
cctacccgcattcctgatatcggtagcgtagcccaagccacaccccgcgatacctatgat
ggttttggagatggttttgaaactgaaccagaatttagctctctccatttgatcaatcat
cctagttaccaagaactaaatgataagcgccggacccggactcgtcggagtcgtattggt
gtgaatggcgctaatgataaagatgaatcccgcttacctaccaatcctttagcttttgtc
aatgatgcagatttggacttagaagaacctgaattaccaatcccagaaatcgctccacct
actattaataaatccggttggacagaaaggccagaacgggcaaaagtcaaactagaaccg
attaaggtagaaccaccagagattattaatgtggaaatgtcagcaaaggaacaagataca
tttgctgaaatgggaatttctcctttactcaagttagatcgggagggaaaaaatccaaga
tcggtgattattaatgttgttcaaccaggacaatcacctattgaagaaactgaatttatc
cccgaaccaattgtaatggaaaagacaattcctgaagttgtcaccattaaaataccgcaa
ccaacttttgagctagaagaagaatcatctttcccaccattagcaatattcccagaattg
acaatagttccccaagtaaaagcaactgaaactgaaggaaaaactgaaatagaagctgaa
atagaagctgaaactaataatggatctactcctaatcgtcgtcgtcgtcgtcgttcatca
gccttagatccagatgttttcggactatga
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