Dendroctonus ponderosae (mountain pine beetle): 109532708
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Entry
109532708 CDS
T04899
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109532708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpa03400
]
109532708
DNA repair and recombination proteins [BR:
dpa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109532708
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
BBS7_hp
AAA_27
Motif
Other DBs
NCBI-GeneID:
109532708
NCBI-ProteinID:
XP_048523105
LinkDB
All DBs
Position
Unknown
AA seq
917 aa
AA seq
DB search
MAEETFAALNLDIVQQQSFVRFFRGLPEKGPSTVRFFNRTDYYTLHDDDAKLAADFTSKI
IKYMGEAPKLRYVCINKHQMETFIRELLLVRQYRVEVYMKVPGKSNDWQLEYKGSPGNLT
QFEQILFENASIETCNSVMGIKFGQNKVVAMSNINTTDLVFEVCEFTDNECLTELEALLA
QIGPRECVIPSGDTPELNNLKIVLERNGILVAKVKRSDFNGDGIIQDLNRLLFFKVGEHP
NAEIYPETNCREAMGCLQAVIHFLNLTGKNSNFNQYRLKKVDAQRYVRIDNAALYALNIL
PKPTFNSEGAPVFTQTAKSYSLSGILNRCVTSQGKRLLEQWIKQPQKDFNLINERLDVVG
CFVRNSEVRTLITKDALTKIPDLMLISKKLSGKKAKLQDCYRLYQAVNCLPSLINILRKL
SNNSVKDMFISPLSEFATDMDKYQTMIETLLDLDLVDRCEFLLKSNVNPEMSELHKLKLN
IEEKMQKLLKKAAADLNLEEGKSVKLECNPQHGFFFRITKKEEQVLRQAKQYKIIDAVAG
GVRFNNDKLTTLNEDYREINEKYEELQKETLDEMLKVAAGYADTVRNINMILAALDVLAS
FATAAVSAKIPYVRPVLKPMSERVLNLKKVRHPCLEQQDQIDFIPNDVKFEENKKTFYTI
TGPNMCGKSTYIRSAGVAVLMAHIGCWVPCEYAELSVVDGILARVGADDCQLKGLSTFML
EMIETSTIIKTATKNSLVIIDELGRGTSTYDGCGIAWAIAEHLAMEVKCFSLFATHFHKI
TKLADTCSTAGNLHVSAVTSNDAITPLYQVKEGQCDASYGIHCAKIAEFPSDVLEWASEN
LRQLEHQEGMKFIRDLDIPIKKKIIEDGDNIVKNTLQKLKTAVEDGADQAALENLIIALK
NDLVQSDNLFVKGLVSN
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaaacatttgcagctctaaatttggacattgtccaacaacagagttttgtg
cggttcttcagaggattacccgaaaaggggccatcgacagttcgtttcttcaatcgcaca
gattattacactcttcacgatgacgatgccaaactggctgcagattttacttcaaaaatc
atcaagtatatgggcgaagcaccgaagctccgttatgtgtgcattaacaagcatcaaatg
gagactttcatcagagagctgcttttggtgagacaatatcgagtggaagtctatatgaaa
gtgccaggcaagagcaatgactggcaattggagtataaaggttccccagggaacctcacg
cagtttgagcagattctgtttgaaaatgccagtattgaaacctgcaattcagtaatggga
attaaatttggccaaaacaaagtggtagcaatgagcaatataaataccacagatctcgtt
ttcgaggtttgtgaatttactgataatgaatgtctgaccgagctggaagcccttctagcc
cagattgggccaagggaatgcgttattcccagtggagacactccagaattgaacaatctg
aaaatagtattggaaagaaacggcattctggtggccaaagttaaaagatctgacttcaat
ggagatggtataattcaggacttgaatagactcctttttttcaaagtgggagagcatcca
aacgcagaaatatacccggaaacaaattgcagggaagcaatgggctgtttgcaagcagtt
atccattttttgaatctcacaggcaagaattccaactttaaccagtacaggctcaaaaag
gtcgatgcacaacgttatgtgagaatagataatgcggctttatatgcgcttaatatacta
ccaaaacctacctttaatagtgaaggcgccccagtattcacacaaaccgccaaatcatac
agcctgtctggaattttaaatcgttgtgtcacttcgcaaggcaaaagacttttggaacag
tggattaagcagcctcaaaaggacttcaatttaatcaatgaaagactagatgtcgtcggt
tgttttgtacgtaactcagaggtcagaacgctaatcaccaaagatgctttaacaaagatt
cccgatctaatgttgatctcgaaaaaactgtctggaaaaaaggccaaactacaagattgc
tacaggctgtatcaagcggtgaactgtttgccgtcattgataaatattttacggaaactg
agcaacaactcagtcaaagacatgttcattagtccactaagtgaatttgccaccgacatg
gataagtatcagacaatgattgagacactgcttgatctcgacttggttgatagatgtgag
tttctgctaaaaagtaatgtcaatccggaaatgagcgagcttcacaaattaaaactaaac
atagaagaaaaaatgcaaaaactactaaaaaaggccgctgctgacttgaatttggaggaa
ggaaaatcggttaagctagaatgcaatccgcaacatgggttcttttttagaattaccaaa
aaggaagaacaggtgttgcgacaggcaaaacaatataaaattattgacgctgtggccggt
ggcgttcgtttcaacaacgacaagctcacaacgctcaacgaagattatcgcgaaatcaac
gagaaatatgaggaactacagaaagaaactctagatgaaatgctgaaagtggctgctggc
tatgcggacacagttcgcaacataaatatgattttagctgctttggatgtactcgcctct
tttgccactgcggctgtatctgccaagataccctatgtccgccctgtgttaaagccgatg
agcgaaagagttctaaacttgaaaaaggttcgacacccatgcttggaacaacaagatcaa
atagactttattccaaatgatgtaaagtttgaggaaaacaaaaagactttctacactata
actgggccgaatatgtgtggaaaaagtacctacataagatctgccggagtcgccgtgtta
atggctcatataggttgttgggtgccctgtgaatatgcggaattgtctgtagttgatggt
atattagcaagagtgggtgcagacgactgtcagttgaaaggcttatccacgtttatgttg
gaaatgatagaaacgtccacaataataaaaacggccacgaaaaactcgctagtaatcatc
gatgaattaggacgaggcacttcaacctatgatggttgcggaattgcctgggccatagca
gagcacttggccatggaagtaaaatgcttctctctattcgcaactcattttcacaaaata
accaaattggctgacacatgttctacggcggggaatttgcacgtatctgcagttacttca
aatgatgctattactcctttgtatcaagttaaggagggtcaatgcgatgctagttatgga
attcattgcgcgaaaattgccgagtttccttcagacgttttagaatgggcatctgagaat
ttgcgccaacttgaacaccaggaaggaatgaagtttattagagaccttgatattcccatt
aaaaagaagataatagaggatggcgacaatattgtcaaaaacacactgcaaaagctgaaa
acagcagtcgaggatggagcggatcaggccgcattggaaaacctgatcattgccttgaaa
aacgatctagtgcaatctgataatctctttgttaaaggtttagtaagcaactag
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