Dendroctonus ponderosae (mountain pine beetle): 109533618
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Entry
109533618 CDS
T04899
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109533618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109533618
03041 Spliceosome [BR:
dpa03041
]
109533618
03009 Ribosome biogenesis [BR:
dpa03009
]
109533618
03016 Transfer RNA biogenesis [BR:
dpa03016
]
109533618
Enzymes [BR:
dpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109533618
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109533618
Spliceosome [BR:
dpa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109533618
Complex C
U4/U6.U5 tri-SnRNP related factors
109533618
Ribosome biogenesis [BR:
dpa03009
]
Eukaryotic type
Pre-60S particles
Helicases
109533618
Transfer RNA biogenesis [BR:
dpa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109533618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
DUF6468
Sorb
Motif
Other DBs
NCBI-GeneID:
109533618
NCBI-ProteinID:
XP_019754541
UniProt:
A0AAR5P1X9
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MAECIDDLFECFEKPEDDLPIEKEADATTLNESVSSSPQQSTPTSCKREYDGVEEVCVKK
IKTEEVNVDDINFEELKNRIIVHSIDTLDSCTHEVACPPGQPYAPLEPRTGEPAKVYPFT
LDPFQKESILCVDNNQSVLVSAHTSAGKTVIAEYAVAKSLINKQRVIYTTPIKALSNQKY
REFLEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRD
KERGVVWEETLILLPHNVHFVFLSATIPNARQFVEWVAHLHQQPCHVVYTEYRPTPLQHF
IYPAGGSGIHMVVDESGVFKDDSFNAAMAVLQNAGDAAKGDLKGRKGGIAGKDPTQSDIF
KVVKMIMERNFAPVIVFSFSKKDCELYAMQMTKLDFNTSAEKQLVDEVFKNAMDVLSDED
KNLPQVENILPLLRRGIGIHHGGLLPILKETIEIMFGEGLIKALFATETFSMGLNMPART
VLFTGMKKFDGQEMRWITSGEYIQMSGRAGRRGLDDKGIVMLMVDEKVPPSVGRDIVKGL
PDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQTNIPILHGNYLAKLAEYNTF
EVKMEDEISVYYAIRRELDFLGAKFRKYITMPKYLIPYMQPGRLIKIKSQDAEYDWGAIV
NFKKSQEIQTSRVGGRVKSKGTTKVLLDVLLHVIPDDGDSKDNTIPKPCLDSEKGEVEIV
CVDSQFVTHISQVRLLCPPDLRSKDDRKSMFKAIKEVKKRFPDGPPLLNPVKDMKIQDSE
FLDVVKKIEIMEKKLYDHPLHKSELLDTEYDKYEKKIIVEVQLDEAKRKLLEAKSVLQLD
ELKYRKRVLRRLGYCSNADVIQLKGRVACELSSADELLITEMLFNGLFVNLTPHQACALL
SCFVCDERSNEAPKLSEELSGLLRQMQDLARRIAKVSTEARLPIDESKYVEQFKPFLMDI
VFAWCNGASFARLCGMTEIFEGSIVRCMRRLEELLRQMVQASKTIGNVELEDKFNHAIKL
IKRDIVFSSSLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggctgagtgcatagacgatttgttcgaatgcttcgaaaaacctgaagacgatctgcct
attgagaaagaggccgatgcgaccacgttaaatgagagcgtttcatctagccctcaacaa
tccaccccaacttcttgcaaacgggaatatgacggggtggaagaagtttgtgtcaagaag
attaagaccgaagaagtgaacgttgatgatatcaacttcgaggaattgaagaacagaata
atagtccatagcattgatactttggactcttgcactcatgaagttgcatgtccacctggt
cagccgtatgctcctttggaacctcgtactggagagccagcaaaagtatacccattcaca
ttggaccctttccaaaaagagtccattttatgtgtggataacaaccaatcagttttggtg
tcagctcatacgtctgcaggcaaaactgtaatagctgaatacgctgttgcgaagtcgcta
ataaataaacagagagttatttacacgactccaattaaagcgttatcgaatcagaaatat
cgtgagtttctggaagaatttaaggatgtaggtctagtcacaggggatgttaccattaat
cctagtgcatcgtgtcttattatgaccacagagatcttacgaaacatgctgtatagaggt
tcagaaataatgcgcgaagtaggttgggtgatatttgacgagattcattacatgcgagac
aaagagcgtggtgtggtctgggaagaaacactaattttactgccacacaatgttcatttt
gtgtttctatcggctacaattccgaatgctagacagtttgtggaatgggtagcgcatttg
catcagcagccatgccatgtggtttacactgagtatcgacccacaccgttacagcatttc
atttatcctgccggcggatctggtattcatatggttgtggatgaatcgggagtttttaaa
gacgacagttttaatgctgctatggcggttttgcaaaatgctggagatgccgcgaaaggg
gatttaaaaggccggaagggaggcattgctggcaaagatccgacccaatctgatatattc
aaggtggtaaagatgattatggagcggaatttcgcgcccgtaattgtcttcagtttcagt
aaaaaggactgcgaattatatgcgatgcaaatgacaaaactcgattttaacacctccgca
gaaaagcaactagtagacgaagtatttaaaaacgctatggatgtgctgtctgacgaagac
aaaaatttgccacaggttgaaaatatccttccgctccttcgcagaggaataggcatccat
cacggaggtttattgcccatattgaaggaaacgatcgaaatcatgtttggcgaaggattg
atcaaagccctctttgccacagaaactttctccatgggcttgaacatgcccgccagaact
gttctgtttactggcatgaaaaagttcgatggacaagaaatgcgatggataacttctggg
gaatacattcaaatgtctggaagagcaggcagaagaggtttggatgacaaaggtatagta
atgttgatggtggacgaaaaagtacctccatctgtcggtagagacattgtgaagggattg
ccagatccaataaactcagctttccatttaacgtacaatatggttctaaacttgctgcga
gtcgaagaaatcaacccggaatacatgttggaaaggtcattttttcagtttcagaaccaa
acaaatattcccatattacatggaaattatctggcaaagttggcagaatataacacgttt
gaagtcaaaatggaagatgaaatttcggtctactatgcaataaggcgggagctggacttt
ttaggggctaagtttagaaagtatattacaatgcccaaatatcttatcccatatatgcaa
cctggtcggcttattaagatcaaatctcaagatgctgagtacgactggggtgctattgtc
aactttaaaaagtctcaagaaatccaaacttcacgagtcggaggtagagttaaatcaaaa
ggaacgaccaaagttcttcttgatgttctcctgcacgtcatccccgatgatggtgactct
aaggataacactattccgaagccctgtttggatagtgagaaaggagaagtcgaaatagtg
tgtgtcgattcgcaatttgtaacgcacatttcgcaagtgcgtcttttatgccctcccgat
ttgaggtccaaagatgaccgaaaaagcatgttcaaagcaatcaaggaagttaaaaagcga
tttcctgatggtcctccattgctaaatccggttaaagacatgaagattcaagactctgaa
tttttagacgttgttaaaaaaattgaaatcatggagaaaaaactttacgaccatcctcta
cataaaagcgagttgctggataccgaatacgacaagtatgaaaagaaaataattgtagaa
gtgcaattggacgaagctaaacgaaaactattggaggctaaatcagttttacaacttgac
gaattaaagtaccggaaaagggtgctaaggcgattgggatattgttccaatgcggatgtg
atccagttgaaaggccgagtagcctgcgagttaagcagtgctgatgaattgttgatcacc
gaaatgttgttcaacggtcttttcgtaaatttgactcctcatcaagcgtgtgctttactg
agttgctttgtctgcgacgaaagaagcaacgaagcccccaaactgtcagaagaattgtcg
ggacttctgaggcaaatgcaggatttggctcggagaatagcgaaagtaagcacagaagcg
cgattaccgattgatgaaagtaaatacgtggagcagtttaaaccgttcctaatggatata
gtatttgcgtggtgtaacggagcgtcttttgctcgattatgcggtatgaccgaaatcttt
gaggggtccattgtgagatgcatgcgacgtttggaagaattattaaggcaaatggtgcag
gcctcaaaaactatcggcaatgtcgaattggaagacaagttcaatcatgccattaagcta
attaagagggatatagtgttttcatctagcttgtacttatag
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