Dendroctonus ponderosae (mountain pine beetle): 109534129
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Entry
109534129 CDS
T04899
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109534129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpa03021
]
109534129
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109534129
Transcription machinery [BR:
dpa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109534129
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109534129
U7-dependent histone pre-mRNA processing factors
109534129
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF4457
Gp58
Motif
Other DBs
NCBI-GeneID:
109534129
NCBI-ProteinID:
XP_019755263
UniProt:
A0AAR5P2A6
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MSLKRKPDSQVPAEESDQLTIRPLGAGQEVGRSCIMVEFKGKKIMLDCGIHPGLSGMDAL
PYVDLIEADEIDLLLISHFHLDHSGALPWFLLKTSFKGRCFMTHATKAIYRWLLSDYIKV
SNIATEQMLYTEADLEASMDRIETINFHEEKDIMGIRFWAYNAGHVLGAAMFMLEIAGVK
ILYTGDFSRQEDRHLMAAEIPTIRPDVLITESTYGTHIHENRDDRENRFTSLVHDIVNRG
GRCLIPVFALGRAQELLLILDEYWGQHPELHDIPIYYASSLAKKCMAVYQTYINAMNDRI
KRQIAISNPFIFKHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDSKNGVI
IAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIKILKPPH
VVLVHGEQNEMSRLKAALQREFEEDQNTSIQLHNPRNTHTVELYFRGEKTAKVMGTLAVE
EPQPGKLIQGILVKRNFNYHILSADDLAKYTELSLSEITQRQSLAYSGNPGVLRHLLAQV
CGLMENLEGDKRMKAFNAVEIIIEPKMVILEWVANPVNDMYADAIVAAVLQADLLDTPTK
CLATSVKVDRMHFKECLIEMLQDMFGEDSVPKIFKGEKLYVSVNDKRADIDLTNLEVKCP
NDETFQQIVQTAVSKLYQSLAPPQLDG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgaaaaggaagcccgattctcaagtgccagccgaggagagtgaccagttaacc
atcagacccctgggcgccgggcaagaggtcggccggtcatgtatcatggtggagtttaag
ggcaagaagattatgctggattgtggcattcatccagggttgtctgggatggacgcgctg
ccctacgtagacctgattgaggccgacgagatcgacctacttctcatatcccactttcat
ttggaccattcgggcgcgctgccctggttcctgttaaagaccagcttcaaagggcgctgc
ttcatgacccacgccactaaggctatctacagatggcttctctccgactacatcaaagtc
agtaacattgcgacggagcaaatgttgtacactgaggccgacctggaggccagcatggac
agaatcgaaaccattaacttccacgaggaaaaggacattatgggcattcgattttgggcg
tacaacgctggccatgtgttaggcgctgccatgttcatgctggaaattgctggagttaag
atactgtacaccggggacttttcaaggcaggaggatcggcatctgatggcggcagaaatc
cccacaatcaggccggatgttttgattacggagtccacatatggcacgcatatccacgag
aatcgggacgaccgcgagaaccgcttcacctcgctggtacacgacatagtaaacaggggc
ggccgttgcctgatcccagtgttcgcgctgggcagagctcaagagcttctgctaattttg
gacgagtactggggtcagcacccggagctgcacgacattcccatttactacgcctcatcg
ttggcgaaaaagtgtatggccgtctaccaaacgtacatcaacgcaatgaatgaccgaatc
aagaggcagatcgctatcagcaacccgtttattttcaagcatatctcaaatctaaagggc
attgatcatttcgaggatattgggccttgtgtgatcatggcctctcctggtatgatgcaa
agcggcctgtccagagagcttttcgagtcctggtgcactgattcgaagaacggcgtcata
atcgcaggttattgcgtggagggtacactagccaagaccatcctgtccgagcccgaagaa
atcaccacgatgagcggccaaaagctgcccctgaaaatgtcggtcgattatatttcattt
tccgcccacacggactaccagcaaaccagcgagtttattaagatcctgaagccgccccat
gtggtgctggtccacggagagcaaaacgaaatgtcgcgcttaaaagcggcgttgcagcgc
gaattcgaagaggatcagaacacctccattcagctgcacaatccgcgcaatacacacaca
gtggagctgtattttcgcggcgaaaaaacagcgaaagttatgggaacgctggccgttgaa
gaaccgcagccgggcaagctgatccagggcatcttggtgaagcgcaactttaactaccac
atcctcagcgcagatgaccttgccaaatataccgaactgagtctgagtgaaatcacgcag
aggcagagtctggcgtattcgggtaacccgggggtgttgcgccacctgctggcacaggtg
tgcggcctgatggagaacctggagggcgataagcgcatgaaggcgttcaacgccgtcgag
atcatcatcgaacccaaaatggtcattctcgagtgggtggccaatccggtgaacgacatg
tacgctgacgccatcgtcgccgccgtgcttcaagcggatttgctggacacgcccactaag
tgtttggcaaccagcgtcaaagtggaccgaatgcatttcaaggaatgcctgatcgagatg
ctgcaagacatgtttggggaggattccgtgccgaagatcttcaaaggggaaaagctatac
gtgagcgtcaacgacaagagggccgacatcgatctgaccaacttggaggtgaaatgtccg
aacgacgaaacgtttcagcaaatcgtccaaacggccgtgtccaagctgtaccaaagctta
gcgccccctcaactagacgggtga
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integrated database retrieval system
