Dendroctonus ponderosae (mountain pine beetle): 109534506
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Entry
109534506 CDS
T04899
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dpa04147
]
109534506
00535 Proteoglycans [BR:
dpa00535
]
109534506
00536 Glycosaminoglycan binding proteins [BR:
dpa00536
]
109534506
Exosome [BR:
dpa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109534506
Proteoglycans [BR:
dpa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109534506
Glycosaminoglycan binding proteins [BR:
dpa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109534506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
109534506
NCBI-ProteinID:
XP_048525060
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MGADVKMAYRQILPDTLSEEFAILINAKPGSRNGGFVFAVVNAMESIVELGVRIAPDNGS
STILSLFYTDVTTDVTSRALANFTVPKFVQKWTKFAFRVTLDDVTLFFNCTETETVSTQR
MPLKLNFGSASTLYLAQAGPLIGDAFEGALAHVKIYRDPRMAAEQCKTDFQDITVLHDAD
LDNSLENNEVEEDEFSNDINSYVERTDYPPFRREDPDGLGTFPPPPPPPDGKGCLCGANE
NCCNFIFNDLQAAGRYRNEKGERGPRGPPGESIRGPPGPPGPAGLPGLAGPENTCTCNAT
SILSSIGISLPYSPPLPALSGKEGTPGIPGVPGRPGEKGLMGPRGEKGERGDRGAPGPPG
PPGPRGEQGKDGVAGPPGPPGPSGPPGPTEIDDVNVNDLNKGSSGVPIIRPGIPGSKGEP
GQPGDSGPKGDKGQIGSKGNSGSKGERGDRGLPGETGSPGVKGDSGIDGFPGTPGTSGVK
GEQGPPGPPGKPGVLTNNGSTTILDCPPGPAGVDGRPGLKGEQGERGPRGLVGPQGLSGE
KGESGTDGALGPVGPPGSKGEKGERGPAGEIFLHKGDQGSEQILILKGEKGDMGKRGRRG
RQGPPGPPGPSGKGGEIGLPGWMGRPGSSGLPGPVGPKGEKGEPSSGGAGTKGEKGDKGA
DGTPGQPGRDGRDSESRFIPVPGPPGPAGPPGLPGLSITGPKGEPGASVFSEPLFNIRPG
PQSAMEELRAVQELADLKDLKMDAAGRSTASPPIAHAVTQKKETSQVSGAMAFKSRNLML
ETTKGSPIGTMVYIIEEESLLVRVNAGWQYVALGALLQTDSTPLPTTTAPPQVHPPFESS
NLVNNNMLPKYPEIHLASENAHLPHRGHATPLPEFNSRVKPHASQSPEEAKTTQFAALRI
AALNSPLSGSVGGIRGGDYECYREAQRAGIKGTFRAFLSTRSQDVSSIVRPIDRVLPVCN
LRGEVLFDSWQDIFDGRGAPFSHQPRIFSFNGKNVMTDPSWPIKAAWHGALLDGTRALDV
SCEAWHSSSYGKFGLAGSLKGQMLLDQNPISCDKKLILLCIESTSELFVQRRRRRRTIDY
GTEGELMSEEQYHQLLNSIH
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgggagcagatgtgaaaatggcatacagacagatattgccggatacattaagtgaagag
ttcgcaatccttataaacgccaagcccggatcaagaaatggtggatttgtttttgccgtt
gtcaatgccatggaatccattgtcgaactgggcgtgagaattgcaccagacaacgggtca
tcaacaatcctcagtcttttttacacggacgtgaccacagacgtcacatctcgagctctt
gccaactttaccgttccgaaattcgtccagaaatggacaaagtttgcgttccgagtaacg
ttagacgatgttaccttgtttttcaattgcaccgaaaccgaaactgtgtcaacgcagaga
atgccattgaagttgaactttggctcagcttcgacactatatttggcccaagctggaccg
ctgattggtgatgctttcgagggggcgttagcccatgtgaaaatatacagagatccacgg
atggctgccgaacaatgtaaaacggatttccaggatattactgtcttgcacgacgcggat
ttagataatagtttagagaataacgaagttgaagaagacgagtttagtaatgacataaac
agttatgtggaacgaacagattacccccctttccgtagagaagaccccgatggcctgggg
acatttccgccgccaccgcccccgccagacggtaagggctgtttgtgcggtgccaacgaa
aactgttgtaattttatttttaacgatttgcaagcagcaggaaggtatagaaacgagaaa
ggcgaaagagggccacggggaccacccggagaatccattcgaggacctccaggacccccg
gggccagcaggcctaccaggactagctggtccagagaacacatgtacctgcaatgctaca
tccatacttagttcaattggaatcagccttccatattctccacccctcccggcactctca
ggaaaagaaggcactcctggaataccgggagtaccggggaggccgggagaaaaaggcttg
atgggtccgagaggcgaaaaaggagaaagaggtgacaggggggctccagggccgccaggt
ccgcccgggccaagaggcgaacagggaaaagatggagtcgctggaccaccaggaccacct
ggccccagcggacctccaggtccaacagaaattgatgatgttaatgtaaatgacttgaat
aagggatcttcaggcgtcccaattatacgacctggaataccgggaagtaaaggagaaccg
ggccaacctggagactctgggcccaaaggcgataaagggcaaatagggtctaagggcaat
tctggctctaaaggagagcgaggagatcgaggattgccgggtgaaacaggaagcccagga
gttaaaggagattcgggcattgacggatttcctggcacgccgggtacttctggcgtgaaa
ggtgaacaaggaccaccgggtccaccaggaaaaccaggcgttttaaccaacaacggttcc
acaacaattctggattgtccaccagggccagccggtgtggatggtagaccaggtttgaaa
ggtgaacaaggagaacgaggacctcgcggtttagtggggcctcaagggctttctggggag
aagggagaatctggaacagatggagccttgggtccagtaggaccaccaggctccaaaggt
gaaaaaggagaaagaggtcctgcgggcgaaatatttttacataaaggggaccagggaagt
gaacaaatattgattctaaagggagaaaagggcgacatgggcaaacggggacgaagggga
agacaaggtcctccgggccctccaggaccttcgggcaaaggaggagagatcggattacca
ggatggatgggtcgaccgggctcaagtggacttcctggtccagttggaccgaaaggtgag
aaaggagaaccatccagtggtggcgcaggaactaaaggagaaaaaggagacaaaggagcc
gatggtactcccggtcaaccgggccgtgacgggcgagattctgaaagccgatttatccca
gtacctggaccaccaggcccggcgggtcctccgggtttaccagggttatccataactggg
ccgaaaggagaacctggagcgtccgtattcagtgaaccattgttcaatatacgccccgga
ccgcaaagtgccatggaagaacttagggctgtgcaggaattagcggacttaaaggatcta
aaaatggatgcagcaggtcgatcgacggccagtccgccaatagctcacgcagtgacccaa
aaaaaagagacttcccaagtttctggagcaatggccttcaaatccagaaatttgatgctc
gaaaccacaaagggaagtcccataggaacaatggtctacatcatcgaggaggagtccctg
ttggttcgggttaatgccggctggcaatatgttgctttaggagctttgttgcaaacggac
tccacacctctaccaacaactacagcaccaccgcaggtacatccgccatttgaatcgagc
aatctcgtcaacaacaacatgttgccgaaatatcccgagattcatttggcctctgaaaat
gcccacctgccacaccgaggacacgccactccacttcccgagttcaactcacgcgtaaaa
cctcatgcgtctcaaagtcctgaagaggccaaaacgacacaatttgctgcgctacgaata
gccgctctcaatagtccattgtctggaagtgtaggtggaattcgaggcggagattatgaa
tgttatagggaagcccagcgagcaggaataaaaggcacattcagggcatttttgtcaacc
cggtctcaggatgtgagttctattgtgcgaccaatcgatcgagtattaccggtttgcaac
ttacggggcgaagtattattcgattcatggcaggatatattcgatggaagaggagctcca
ttttcgcatcagccgagaatattctctttcaatggtaaaaacgtaatgacagaccccagt
tggccaataaaagcagcttggcatggagctttgctagatgggactcgagctctggatgta
tcatgcgaagcatggcattcatcgtcttatggaaagtttggattggctggaagcctcaaa
gggcaaatgcttctggatcaaaatccgatatcctgtgacaaaaaactgatcttgctttgc
atagaatccaccagcgaattattcgtgcagcgcagaagaagaagaagaacgatagattat
ggcactgaaggagagctaatgtcagaggaacagtatcatcaactactgaattccattcac
tag
DBGET
integrated database retrieval system
