Dendroctonus ponderosae (mountain pine beetle): 109535431
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Entry
109535431 CDS
T04899
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109535431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpa03041
]
109535431
03009 Ribosome biogenesis [BR:
dpa03009
]
109535431
Enzymes [BR:
dpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109535431
Spliceosome [BR:
dpa03041
]
Complex A
U2 snRNP components
U2 related factors
109535431
Complex B
109535431
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109535431
Ribosome biogenesis [BR:
dpa03009
]
Eukaryotic type
90S particles
Helicases
109535431
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
Myosin_head
ATPase
Flavi_DEAD
ResIII
TsaE
T2SSE
ABC_tran
AAA_30
Motif
Other DBs
NCBI-GeneID:
109535431
NCBI-ProteinID:
XP_019756902
EnsemblRapid:
LOC109535431
UniProt:
N6UB91
LinkDB
All DBs
Position
Unknown
AA seq
715 aa
AA seq
DB search
MSKRRIEVLDPFIKKKREEKGIPTAITYTQVAATPMNPYNNLPYTQRYHELYRKRIGLPV
FEYRQDFMRLLSDNQCIVLVGETGSGKTTQIPQWCVEYAMKIGQKGVCCTQPRRVAAMSV
AQRVSEEMDVALGQEVGYSIRFEDCSSAKTVLKYMTDGMLLREGMSDPMLDAYQCILLDE
AHERTLATDILMGVLKEVIKQRTDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEI
FYTPEPERDYLEAAIRTVIQIHMCEEIAGDVLLFLTGQEEIEVACKRIKREIDNLGPEVG
ELKCIPLYSTLPPNLQQRIFEDAPPSKANGAIGRKVVVSTNIAETSLTIDGVVFVIDPGF
AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTEKAFKNEMQDNTYPE
ILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGAV
MAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDAKMRFAHID
GDHLTLLNVYHAFKQSMEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFHLKRTSTDFT
SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLDHKPEWVIYNEFVL
TTKNYIRTVTDIKPDWLLKIAPQYYDLNNFPQCEAKRQLEILQNRLESRQFQQGF
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgtcgaatagaagtgcttgatccctttatcaagaaaaaacgagaggagaag
ggtattcctacagcaatcacctacactcaagtggccgctacccctatgaatccctacaac
aacctgccctacactcaacgctaccatgaactctaccgcaaacgaatcgggcttccggtt
ttcgagtatcgacaggatttcatgcgacttttgtccgacaatcagtgtatcgtcctggtg
ggtgagactggctccggaaaaaccacccaaatcccccaatggtgcgtcgagtacgcgatg
aaaatcggccaaaaaggagtctgttgcacacaacctcgaagggtggcagccatgtccgtg
gcccagagagtctccgaggaaatggatgtcgctttaggacaggaagtcggctacagtatt
cgatttgaggactgttcatcggccaaaactgtattaaaatacatgaccgacggtatgttg
ctgcgcgaaggaatgagcgatccgatgttagacgcctaccaatgtatccttctggatgag
gcgcacgaaagaacgctggctaccgacattctgatgggcgtccttaaggaagtgatcaag
caacgtacagacttgaagctggtcattatgtccgctactttggacgctggcaagttccaa
cagtacttcgacaatgcgcccctgatgaacgtccctggacggacacatccggttgaaata
ttttacactccagagccggaaagagactatctggaggcggccattagaacggtcatacag
atccacatgtgtgaggaaatagcgggcgacgtgctgctgttcctaacgggtcaagaagag
atcgaagtggcctgtaaacgcatcaagcgcgaaatcgataatctcggcccggaagtgggc
gaactaaaatgcatcccactatactccacattgccgccgaatcttcagcagcgcatcttt
gaagatgcgccacccagcaaggcaaacggtgccattggacggaaagtcgtggtttccacc
aacatcgccgaaacttctctaactattgacggcgtcgtcttcgtgatagatcccggtttt
gctaaacagaaggtttacaatccgaggattcgtgtcgagtcgttgctggtgtctcccatc
agcaaagcatccgctcagcaacgagccggacgtgccggccgaaccaaacctggcaaatgt
ttcaggttgtacacggaaaaggcattcaagaatgagatgcaggacaatacttacccggaa
attttgcgatcaaacttgggttctgtggtgcttcaactgaagaaactgggcatagacgat
ctcgtccacttcgattttatggatccgccagcgcccgagactctaatgcgcgctttagag
ctgctcaattatctggctgctttggatgacgatggaaacttgaccgacttgggcgccgtt
atggctgagtttcctttggacccgcaactggccaaaatgctgatcgccagttgcaaccac
aactgctctaatgaaatattgtcaataacagccatgttatcagtcccacagtgtttcgtc
agacccaacgaggcgaagaaggctgctgatgatgccaagatgcgctttgcccacatcgat
ggtgaccacctaacattgctgaatgtttatcacgctttcaagcaaagtatggaggatcct
caatggtgttacgacaacttcgtgaattatcggtccctaaagtctgcagacaatgttcgg
cagcaattatcgcgaattatggaccgtttccacctgaaaagaacatccaccgatttcacg
agcaaagattattatattaacatccgcaaagctctagtcaacggctttttcatgcaggtg
gcgcacttagagaggaccggccactatttaacaataaaagataaccagattgtccaactg
cacccgtcgacctgtttggatcacaagccagaatgggtaatctacaatgagttcgtgtta
accacgaaaaactacattagaactgtgacggatattaagccggattggctattgaaaatc
gccccccagtactacgacttgaataacttcccgcagtgcgaagccaagcggcagctggaa
attctgcaaaaccggctcgagtcccggcagttccagcaaggtttttag
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integrated database retrieval system
