Dendroctonus ponderosae (mountain pine beetle): 109535698
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Entry
109535698 CDS
T04899
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03022
Basal transcription factors
dpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109535698
09124 Replication and repair
03420 Nucleotide excision repair
109535698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpa03021
]
109535698
03400 DNA repair and recombination proteins [BR:
dpa03400
]
109535698
Transcription machinery [BR:
dpa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109535698
DNA repair and recombination proteins [BR:
dpa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109535698
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Eno-Rase_FAD_bd
Motif
Other DBs
NCBI-GeneID:
109535698
NCBI-ProteinID:
XP_048526129
LinkDB
All DBs
Position
Unknown
AA seq
547 aa
AA seq
DB search
MSTSSENVLLQVPSVRFKKGDGSLFLMDERLIWMVESRDTVVVSHPYADMKSQKISPEGK
AKVQLQVVMHNGVSSTFHFINKSGLQAQLADRDKVKDMLQTLLPKFKRKVDKELEEKNRL
LSTNPTLLQLYKDLVMTEVVSSEEFWVQHAQQYSQKIKQLPQEIGVSGAFLADIKPQTDG
CNGLKYNITPDIIECIFKTYPAVKKKYIENVPNKLTEAQFWTKFFQSHYFHRDRKYAENK
DLFTECGKIDDQEMRKDIQAGVNDPLVNLTEFEDNTLEEGYGGVPDKPISNIGTVSQAMI
KRFNQHSIMVLKASKNKANEVASDGAQVKADSSAEKSLDEPVSKKQKILDKISYDDLEDN
EKATNGNIHLSLSKVERYLHGPMPDTITEHINPNEASHIMRNVLQEARQWQARPHMPNYG
IVPPSAAIQALGDLSPGGALMRGFQEQSLAQLVPPNIEKEVRNLYLALCELLGHFWKCFP
PTSAAAEQKLMKMNEALQRFQSVKLKPFEDKLIRELTPLSQHLTTHLNQLLNAAYQKYSN
WQKIKSR
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacttcaagtgaaaatgtgctacttcaagttccaagcgttcgattcaagaaaggc
gatggatccttgtttctcatggacgagaggctgatttggatggtagaaagtagggacaca
gttgttgtttctcacccttatgcagacatgaaatcccaaaaaatatccccagaaggtaaa
gccaaagtccaactccaagtggtgatgcataatggggtttcatccacttttcattttata
aacaaaagtggactgcaggcacaacttgcagacagggataaagtaaaagacatgctacag
actttattgcctaagtttaaacgaaaagttgataaggaattggaagaaaaaaatagatta
ttatctactaatccaacgttgctgcagttgtacaaagatttagtgatgaccgaggttgtt
agctctgaggaattttgggtccagcatgcacaacagtattctcaaaagattaaacagctt
ccacaagaaattggagtttctggggcatttttagcagatatcaagccacaaactgatgga
tgtaatggtctaaagtacaacatcactccagacattattgagtgtatttttaaaacatat
cctgcagttaaaaagaagtatattgaaaacgttccaaacaaattaaccgaggctcagttt
tggaccaaattcttccagtctcattattttcatcgagatcgtaaatatgcagaaaacaaa
gatttgtttactgagtgtggtaaaatagatgatcaagagatgagaaaagacattcaagct
ggtgtaaacgaccccttggtaaatctaactgagtttgaagataatactttagaggaagga
tatgggggagttccagacaagccaataagcaatataggcactgttagccaagcaatgatt
aaaagatttaatcaacactcgattatggtgttaaaggcgagtaaaaataaggctaatgaa
gttgcaagcgatggtgctcaggtaaaggcagattcctctgcagaaaaatcgttggatgag
ccagttagtaagaagcaaaaaatattagataaaattagttacgatgatttggaagataat
gagaaagctacaaatggaaatattcacctaagtttatccaaggttgaaagatatctccac
ggtcctatgcctgatacaataaccgaacatatcaatccgaatgaggcgtctcatatcatg
cgaaatgtgcttcaagaagcgcgtcaatggcaggctaggccgcatatgcccaattatggc
attgtgcctccgtctgctgctattcaagctttgggtgatctttcaccgggaggtgctctt
atgcggggctttcaagagcaatctttagcacaattggtacctcctaatattgaaaaagaa
gttagaaatctttacctggcgctctgtgaactgttgggacatttctggaaatgttttcca
cccacatcggcagccgctgagcaaaaactcatgaaaatgaacgaagctttgcaacgattc
cagtccgtaaagctaaagccttttgaagataagttaatacgggaactcacgcctttgtca
cagcaccttaccacacatttaaatcagcttttaaatgcagcatatcaaaagtatagtaat
tggcaaaaaatcaaatcgagatga
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