Dendroctonus ponderosae (mountain pine beetle): 109535769
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Entry
109535769 CDS
T04899
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109535769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109535769
03041 Spliceosome [BR:
dpa03041
]
109535769
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109535769
Spliceosome [BR:
dpa03041
]
Complex B
Other components
Prp19-related factors
109535769
Complex C
109535769
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
TPR_12
TPR_15
TPR_10
ARM_TT21
NRDE-2
PPR
RPN7
TPR_7
ARM_TT21_C
SNAP
TPR_1
Tcf25
Motif
Other DBs
NCBI-GeneID:
109535769
NCBI-ProteinID:
XP_019757315
UniProt:
U4U5G6
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MALSTANSQPAEIIFSEEDLPYEEEILRNPYSVKHWLRYIDHKKKAPNYGVNLIYERALK
ELPGSYKLWYNYLRIRRQQVKNRCITDPGYEEVNNAFERSLVFMHKMPRIWMDYCTFLTD
QNKITRTRKVFDRALRALPVTQHHRIWPLYLLFVKKHDIPETAVRVFRRYLKLFPENAEE
YVEYVTGAGRLDEAAVVLAKVVNDENFVSQNGKSKHQLWNELCELISNNPGKVVSLNVDA
IIRGGLRRYTDQLGHLWNSLANYYVRSGLFDRARDVYEEAVQTVTTVRDFTQVFDAYAQF
EELSLSRRMEEVSKITEPSDNDNIELELRLARFEDLMERRLLLLNSVLLRQNPHNVQEWH
KRVQLYEGKPHEIINTYTEAVQTVQPKLAVGKLHSLWVEFAKFYEKNGQVDDARIIFEKA
TEVPYTKVEDLASVWCEWAEMEIRNENYEEALKLMYRATVLPSRKVAYHDESETVQSRLY
KSLKVWSMYADLEESFGTFKSCKAVYDRILDLKIATPQIIINYGVFLEENNYFEEAFRAY
EKGISLFKWPNVYDIWNTYLSKFLKRYGGSKIERARDLFEQCLENCPPQFAKHLYLLYAK
LEEEHGMARHAMAVYERATKAVPETDMFEVFNIYIKRAAEIYGIPKTRQIYEKAIESLPE
KDTRQMCLRFADMETKLGEIDRARAIYSHCSQICDPRVTIEFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQAMYNTQVNMMSAQMFTSAGSVTGTTADLAPGEKDGMRLLEAKAAEMANSA
PGLGQRPGNIMFVRGETQGDKKDKVVNPDEIDIDEDEDEDEPEPRLEQKDVPSEVFGSLK
KPKPI
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggctttaagcactgcaaacagtcagccggcggaaattatattttccgaagaggacctg
ccctacgaagaagaaatacttagaaatccttactcagttaagcactggttgcggtacata
gaccacaaaaagaaagcccccaactatggagtgaacttaatctatgaacgagccctgaag
gagcttcctggctcctacaagctctggtacaactatttaagaatcagacgacagcaagtt
aaaaacagatgtatcactgatcctggatacgaggaagtgaataacgcttttgaaagatcg
ctggtgttcatgcacaaaatgccccgaatctggatggactactgtacgtttctaaccgac
cagaataaaatcactcgaacaaggaaggtcttcgatagagccttaagagctttgccagtc
acccagcatcaccgcatttggcctctgtatttgctgtttgtaaagaaacatgacatcccg
gagactgctgtgagagtgttcaggagatatttgaaactgttccctgaaaacgctgaggaa
tatgtagagtacgtgaccggggctggaaggttggatgaagcagccgttgtactggctaag
gtagtaaatgatgaaaattttgtatcgcagaatggcaaatcgaagcatcaattgtggaat
gagttgtgtgaactgatatctaataatccaggtaaagtggtgtcactaaatgttgatgca
attattcgaggtggtttgagaaggtatacagatcaactcggtcatctatggaactcccta
gctaattattacgtgagaagtggcctgtttgatcgagcaagggatgtttatgaggaagca
gtacaaactgtgaccaccgtacgcgattttacccaagtttttgatgcttatgcccagttc
gaggagttgagtctgagtagaagaatggaagaagtgtctaagataactgagccttcagat
aatgataacattgagttggaattgagactagcccgatttgaggatttaatggaaagacgg
ttgttgctgttaaattccgtgctgttgaggcagaacccacataatgtccaggagtggcat
aaaagagtccaattgtatgaaggaaaacctcatgaaatcattaacacttacacggaagca
gttcaaacagtgcagccgaaactggccgtaggcaaactgcattcgctctgggtggaattt
gcgaaattttacgagaaaaacggacaagtggacgacgccaggattatttttgaaaaggcc
actgaagttccatataccaaagtcgaggatttggcttctgtttggtgcgaatgggcggaa
atggaaataaggaatgaaaactatgaagaagccctaaagctgatgtatcgcgccactgtt
cttccatcaagaaaagtagcatatcatgacgaatctgaaactgtacaatctagattatac
aaatccctgaaagtgtggtcaatgtatgcggacctagaagagagctttgggacttttaag
tcgtgcaaagcagtgtacgatcgaattcttgatttgaaaattgccactccacagatcata
atcaactatggagtgttcctagaagagaacaactatttcgaggaagctttcagagcttat
gaaaagggaatttccttgttcaaatggccaaatgtctacgacatttggaacacatattta
tccaaattcttgaaaagatatggcgggtccaagattgagagggcaagagacttgtttgaa
caatgcctggaaaactgcccgccccaatttgccaagcatttgtatttgctctatgccaag
cttgaggaggagcacggcatggccagacatgccatggctgtatatgaaagagccacgaaa
gcagtgccagaaactgatatgtttgaggtattcaatatctacattaaaagagctgcggag
atctacggcattccgaaaacgaggcaaatctatgagaaggccatagagtcattgcctgag
aaagacaccagacaaatgtgcttgagatttgcagatatggagacaaaactaggagaaatc
gatagagcaagagcaatttattcgcattgcagtcaaatatgcgacccaagagtcactatc
gaattctggcagacttggaaggaatttgaggtcaggcatggaaatgaagacacaatgagg
gaaatgttgcgaatcaagagaagtgtccaggccatgtacaatacccaggtgaatatgatg
tctgctcaaatgtttacatctgctggttcagttacgggaacaactgcggatttggcgcca
ggagaaaaggatggaatgcgtcttttggaagccaaagcagccgaaatggccaatagcgct
cctggacttggacaaaggccaggcaatataatgttcgttagaggtgaaacccagggagat
aaaaaggataaggtagtcaatccggacgagattgatatagatgaggatgaggacgaggac
gagcctgaaccgcgtttggagcagaaagatgtcccgtctgaagtgtttggtagtttgaag
aaacccaaaccgatttga
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