Dendroctonus ponderosae (mountain pine beetle): 109537516
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Entry
109537516 CDS
T04899
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109537516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpa03021
]
109537516
03036 Chromosome and associated proteins [BR:
dpa03036
]
109537516
Transcription machinery [BR:
dpa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109537516
Coactivators
SAGA/TFTC/STAGA complex
109537516
Chromosome and associated proteins [BR:
dpa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109537516
STAGA complex
109537516
TFTC complex
109537516
SAGA complex
109537516
SLIK complex
109537516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR19_1st
PEP5_VPS11_N
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Vps41
WDR54
Beta-prop_WDR35_TULP_N
VPS8_N
Motif
Other DBs
NCBI-GeneID:
109537516
NCBI-ProteinID:
XP_019759850
UniProt:
N6U9K1
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MSNGLDKNQLTAVLQVLKKYNLKETEEQLRKEANLTDQVDQQDSDVSSVLTGYKSDGDPE
TYEGSYIELKRFVENSLDIYKHELGMILYPVLVHMYLELVYNGHTDKAISLMKKFGPEQD
IYYQDDLKKLAMVTRRDHMNGNELTDTFKSNQFIIRMSRDTLSLLKRHVHDKKASVLLNI
VQEHLYFDMYEGVARNKTQIDATSGAVGGEAKRQDNKIKVYYGIPKAPDIQILSAPVEDE
EEPAEQESPDKPKKKKSKKDPLLSKKTKSDPNAPPPDRIPIPDLKDNDKMEKLRALRETS
KRTNLGPENLPSCCAYTLLNANYNVCCAEITEDSSMLAVGFNDSIIKVFTLVPQKLKSMK
SADKLQEVNIEAEDVLVRMMDERSGESARSLCGHNGPVYSVSFSPDRSLLLSCSEDSTIR
LWSLQIWTCLVVYKGHMFPVWDVKFSPVGYYFASCSYDRTARLWATDHYQPLRIFAGHFS
DVDCIQFHPNSNYVATGSSDRRVCLWDITTGNHVRLMTGHKQPIQSLAFSICGRFLASAG
TDCRVLIWDLSHGHLVAELTGHSKTIHCLAFSRCGNILVSGGLDCSVKVWNFTKLTEEIS
SEDVNISHNPDVKTGDDYLLRTFQTKNSPLINLHFTRRNLMLAVAVFDGIAS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgggcttgataaaaatcaattgaccgccgtattgcaggtgttgaagaaatac
aatttaaaggaaaccgaagaacaactgagaaaggaagcgaaccttactgatcaagtagat
caacaagattcagatgtaagcagcgtgctcactggatataaaagcgatggagacccggaa
acctacgaaggctcttacatcgagttgaaacgctttgtagaaaactcccttgatatttac
aaacatgaattgggaatgattctataccctgtgctggttcacatgtatcttgagctggtt
tacaatgggcatactgataaagcaatctcactgatgaaaaagtttggtccagagcaagat
atttactatcaggacgacttgaaaaaactagctatggtaaccagacgagaccacatgaat
ggaaatgaattgactgatacgtttaaatcgaatcagtttattatcagaatgtccagagac
actttatctctgttaaagcgacacgtacatgacaagaaagcatcggtgttattgaacatc
gtgcaagagcatttgtattttgatatgtatgaaggagtagccagaaacaagacgcaaatt
gatgccacatctggagctgttggtggcgaagctaaaagacaagacaacaagataaaggta
tactatggaattcccaaggccccagatattcagatactatcagcgccagttgaagatgaa
gaggaaccggccgaacaggagagtcctgataaaccgaaaaagaaaaagtcgaaaaaggat
cctttgctttctaagaagactaagtctgacccaaacgcacctccaccggaccggattccc
atacctgatttaaaggacaacgataaaatggagaaactgagagccttgcgcgaaacttcc
aaaagaaccaatttaggaccggagaatctaccctcatgctgcgcatatactttgctgaat
gctaattataatgtttgctgcgcagaaataacagaggactcaagcatgcttgctgtcggc
tttaatgattcgatcattaaagtgtttacgttggttccacaaaaattgaaatctatgaag
tccgctgataagttacaagaagtgaatattgaggctgaggatgtgttggtcagaatgatg
gatgaaagatcaggagaatctgctaggagcctttgcggccacaatggcccagtctattca
gtgtcgttttcaccggacagatcgctattgctaagctgttcagaagactccactatcagg
ttgtggagcctgcaaatatggacctgcttggtcgtttacaagggccacatgtttccagtg
tgggatgtaaaattttccccagttggttattacttcgcttcttgttcgtacgatagaacg
gcgcgcctttgggccactgatcattatcagcctttgcggatattcgctggacatttttct
gatgttgattgcattcagtttcatccaaattcgaactatgttgctactggctcaagtgac
cgaagagtgtgtttgtgggacataaccactgggaatcatgtgcgactgatgactggccac
aaacagcctattcaatctttggcttttagtatttgcgggcgctttttagcctcagccggc
accgactgcagagtgttaatttgggacctctcgcatgggcacttggttgctgaattgact
ggtcatagtaaaacgattcattgcctagcatttagtaggtgtggaaatattttggtgtca
ggagggctggactgttcggtgaaagtgtggaattttacaaagttaactgaagaaattagc
tcagaagatgtgaatatttctcataatcctgacgtgaaaactggtgatgattacttactg
agaacctttcaaacgaagaattcgccacttattaatttgcattttaccagaagaaatttg
atgttggctgtggctgtatttgacggaatcgccagttaa
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integrated database retrieval system
