Dendroctonus ponderosae (mountain pine beetle): 109538448
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Entry
109538448 CDS
T04899
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpa03041
]
109538448
Enzymes [BR:
dpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109538448
Spliceosome [BR:
dpa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109538448
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
DEAD
R3H
Ank_2
HA2_N
Ank
Ank_5
YfbR-like
Ank_3
nSTAND3
ATPase
Motif
Other DBs
NCBI-GeneID:
109538448
NCBI-ProteinID:
XP_019761247
UniProt:
A0AAR5PK25
LinkDB
All DBs
Position
Unknown
AA seq
1514 aa
AA seq
DB search
MSARRNVGASWRNSGAPKLQKQRKEHVRFGVNKGSASRNKLVIDEHIQEATPECLRIEID
KIFNEFLADPDKTEYIFPSEYNNLQRKYVHYKAQIMNLVSRSHGKEPNRQLHLLKKPKQL
ASQSVQVQICNEVYEELQEFDKKFSKIQTEPQTYRAIKRFEKVYGKIQDGEPVVPQRANN
VHQGIETVRHSLPIFEKRNLVMDCINLNQVTIISSETGSGKTTQIPQYILEDAVSNNQPC
KIICTQPRRISTIAAADRVAYERGETVGGSVGYHIRLESKCGYNTNLLFCTIGVFLRNLM
CGNKCLKNLTHVIVDEIHERDKLSDFLLICLKQNLNQFPHLKVILMSATVNTVKFQEYFN
SSAVLSIAGRLHDIQTYFLEDILSMTKYFTPQMRSAMVKLANKKSNSHSFTQQKNVRFSE
QDQTNFNLTLDAYRNFSDDYNYTVHYDEATADLLQLFISEDVPVDQQHSLKGWTALMIAC
QLGDVEFVSKLCTLGASTDIADAMGRTAFDYAKDLNKNGVLQLLTTRQADKKTNECNTDD
LQFLRQLYDMTTPDDFIDYELIVALIKYIHANSDTGSILVFLPGYDEIMQCNDCVMDSEL
AGIYRIFFLHSSMNMKDQCDIFKSLPNQRKLILSTNIAETSITVEDVVFVIDVGKAKEKV
YDSYNKLSTLQTQWISRACAKQRQGRAGRVRTGFCFRLYSNQRFSHMPEERVPEILRVSL
EELCLNAKIIAPKSMNIYNFLCLAPDPPSVNSVGVAVEHLQSLGALDKEEDLTRLGEYLA
QLTLEPRLGKMLIFGCIFKCLEPMLTLCAVMAHKDPFQLPPQANLKTVAAAKRRELIDGV
PSDHSVYLLVFHKWQSEVSRGRSKQFCSEYFISESTMYSVLETRRQLLGQLRAVGFVNDT
HSIDNFNVNSNSWGLVKAIMSAAFFPNVAYPIQKGCSLATRNEKKVFIHNTSVCASKTYC
DWFFFNEMVKNRINFMVRGVTACTSFMVAVMCGVSSIYPSSHSVNIDDWLEFYFGDNIII
KFRQALHSFIEKSILNPRHSYEKDNLISGTLRRIMDMDEVNAQFVQPKNVGQRPRFLYKV
VHEASGPNRNVTFNRSDMRQRSAPDNFQRQDLNAKSIEDHKKGRTPKRYIPPHKKDVAVP
KSAAQHLNFDSFGSSTSVSNIIPSMQILSLKSGTSNSAASLLNGLGPVAAIDRENSPSAS
NYQNGNGFSKYNYGGYQRRNHQSGYANLDSFNGSFNPDRNGYNQYSSGYGEQQTNSRDFE
LNGFNDAHCFTPRPDLAGRKIVKQQKLGDFECRDAFSLPSAETALEPDLLPFPNFAGPNE
QQLQPMNWNSNGYLELQLPPMNDAFQSTNSHFNATPGHNRLSANAMPFAMLPKKSIDYPD
NPIFILIKANEKRNVDIAQSCKKWVLAPQTEKQVVKFASKEKIVYFVFFVKELQVIMGIA
EFTNLYIGTSKPTAILAWKYMSPLPRHKIKHLVNPYNFDKPICDGLDGMVIRQDVGEELM
RIYAEFEKLMFKNR
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctaggagaaatgtaggagccagttggcggaattctggggccccaaagctgcaa
aaacaaagaaaggaacatgtcagatttggtgtgaacaagggtagtgcaagcaggaataaa
ctggtaattgatgaacatatccaagaagccactccagaatgtttaagaattgagattgat
aagatattcaacgagttcttggcagatcctgataagactgaatacatttttccgtctgaa
tataataatttgcaaagaaaatatgtgcattataaggcccagataatgaatctggtctca
agatctcatggcaaagagcccaataggcagctgcatttgctcaaaaaaccgaaacagtta
gcgagccagtcagttcaggtgcaaatctgtaatgaagtctatgaagaactgcaggagttc
gataagaagtttagtaaaattcaaacagagcctcagacttacagggcaattaaacgattt
gaaaaagtgtatggtaaaatacaggacggcgaacctgtggttccacagagagctaataat
gtgcatcagggtattgagactgttcggcatagtcttccgatctttgagaaacgaaacctt
gtaatggattgcattaatttgaatcaggtcacaattatttcctctgaaactggttctgga
aaaacaactcaaatccctcaatacattttggaggacgctgtatctaataaccaaccttgt
aagataatatgcactcagcctcgcagaatttcaactattgctgccgctgatagggttgct
tatgaaagaggcgaaacagttggaggcagtgttggctatcatattaggctcgaatcgaaa
tgcggatacaataccaacctgttattttgcaccattggtgtgttcttgagaaacttaatg
tgtggcaacaagtgcttgaaaaacctaactcatgtgatagtagatgaaattcacgaaaga
gataaattgagcgatttcttgctaatttgccttaaacaaaatttgaaccagtttccccat
ttaaaggtcattcttatgtcagccacagtgaacaccgttaaatttcaagaatactttaat
tcaagcgctgtactttcaattgctggtcgtttgcacgatattcaaacatattttctagaa
gatatcttaagtatgaccaagtattttacacctcagatgcgtagtgcgatggtcaaatta
gcaaacaagaaatcgaactcacacagttttacacaacagaaaaacgtacgattttcagaa
caagatcagaccaactttaacttgaccttagatgcttataggaatttcagtgacgactat
aattacaccgtgcattatgatgaagctactgctgatctccttcaattatttatttctgaa
gacgttcctgttgatcagcagcactctttaaaaggttggaccgctttaatgattgcgtgt
cagttaggagatgtggagtttgtcagtaaattgtgtacattaggtgcaagtaccgatatt
gcagatgccatgggaagaactgcgtttgattatgcaaaagatttaaataaaaatggcgtt
ttgcaattgttgaccacaaggcaggccgataagaaaactaatgagtgtaacactgatgac
ttgcaatttttgaggcagctctatgatatgactactcctgatgatttcattgattatgag
cttatcgttgctctaatcaagtatatacatgctaactccgacacaggatctatactggtt
tttttgcctgggtatgacgaaataatgcagtgtaacgattgcgttatggattctgagctt
gccgggatatacaggatttttttcctacacagcagcatgaacatgaaggatcaatgtgat
attttcaagtccctgccaaatcagagaaagttgatattaagcacgaacatcgccgaaacc
agtataacagttgaagacgtcgtctttgttattgatgttggtaaagccaaagaaaaagtt
tatgattcgtataataaactgtccactctacaaactcaatggatttcacgtgcttgtgcc
aaacagcgccaaggacgagcgggaagagtaagaactggattctgttttagactatattca
aatcaacgctttagtcacatgccagaagaaagagttcccgagattttaagggtgtcgtta
gaagagctgtgtctaaatgccaagattattgcaccgaagtccatgaacatatacaacttt
ctctgtttagccccagatccaccttcagttaactcagtcggtgtcgctgttgaacacttg
caatccctaggagctctagacaaagaggaagatcttacaagattgggagaatatttagct
cagcttacactcgaaccgaggctcggaaaaatgctgatatttggttgcatttttaaatgt
ttggagccgatgctgacactatgtgccgttatggcacacaaagacccatttcaactaccc
ccacaggcaaacttgaaaactgttgccgctgcgaaacgacgtgagcttatagatggtgtt
ccaagtgatcattcagtctatttattggtctttcacaaatggcagagcgaagtcagcaga
ggtcgttcgaaacaattctgttctgaatattttatttccgaatcaactatgtattctgta
ctggagaccagacgacaactactaggccaactgagagccgttggttttgttaatgacact
cactcaatagataattttaatgtgaacagcaattcatggggtttagtcaaagccatcatg
agtgccgcattttttcccaacgttgcttatccaatacagaaaggatgcagtttggccacc
agaaatgagaaaaaagtgttcatacataatacaagtgtttgcgcttcaaaaacatattgc
gattggttcttttttaatgaaatggttaaaaatcgaattaattttatggttcgcggtgtc
acagcatgcacttcattcatggttgctgtaatgtgtggagttagttccatttacccatcg
tcccactcagttaatatagatgattggctggagttttatttcggcgataatataattatc
aaatttcggcaagccttacattcgtttatagaaaaatccatcttgaatccaaggcattcc
tacgagaaagacaatttaatttctggaactttgcgaagaataatggacatggacgaagtt
aatgcacaatttgtacagcccaaaaatgtgggacagagacccaggtttttatataaagta
gtacatgaagccagtggcccaaatagaaatgtaacattcaatcgcagcgatatgaggcag
cgttcagcacccgataattttcaacggcaggatctaaacgctaaatccatcgaggaccat
aaaaaaggtcgtactccgaagcgttacattccacctcataagaaagatgtggcagtacca
aaatcagctgctcaacatttgaactttgattcttttggctcaagcactagtgtctctaat
ataataccgagtatgcaaattcttagcctgaaatctggtacatccaattcagcagcttct
ttattgaatggcttaggaccagtagctgctatagatcgagaaaatagtcccagtgcttct
aactatcaaaatggcaacggattttctaaatacaattacggtggttatcagaggcgtaac
caccagtcaggatatgcgaatttggacagttttaatggatctttcaatccggatagaaat
ggatataatcaatatagttctggatatggagaacaacaaacgaacagtagagacttcgag
ctaaatggctttaacgatgcacactgtttcactcctcggccagatttagcaggtcgcaaa
attgttaaacagcagaaattgggagattttgaatgcagagacgcattttcactgcctagt
gcagaaacggcattggaacccgatcttctcccatttccgaattttgcaggccctaatgag
cagcagcttcaaccaatgaattggaactcaaatgggtatcttgaacttcaattaccgcca
atgaatgatgcattccaaagcaccaattctcatttcaacgccactcctggtcacaatagg
ttatcggcgaacgcaatgccttttgccatgcttccaaaaaaatctatcgattatcccgat
aatcctatttttatcttaataaaagcaaacgagaaacgaaacgttgatattgctcaaagt
tgcaagaaatgggttctggctccccaaacggagaagcaagtagtaaagtttgcaagcaaa
gaaaagatcgtgtacttcgtattcttcgttaaagagcttcaggtgattatggggatcgca
gaatttacaaatctctacatagggacgtctaaaccaaccgccatccttgcctggaagtat
atgtctcctctgccgagacataaaatcaagcatctggtaaatccatataacttcgataag
ccaatttgtgatggtcttgatggaatggtcattcgacaagatgttggcgaagaactcatg
aggatttatgctgagtttgaaaaactgatgtttaaaaatcggtaa
DBGET
integrated database retrieval system
