Dendroctonus ponderosae (mountain pine beetle): 109538613
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Entry
109538613 CDS
T04899
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa04382
Cornified envelope formation
dpa04512
ECM-receptor interaction
dpa04518
Integrin signaling
dpa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109538613
04518 Integrin signaling
109538613
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109538613
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109538613
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dpa04147
]
109538613
00536 Glycosaminoglycan binding proteins [BR:
dpa00536
]
109538613
Exosome [BR:
dpa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109538613
Glycosaminoglycan binding proteins [BR:
dpa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109538613
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109538613
NCBI-ProteinID:
XP_019761485
UniProt:
A0AAR5PKC6
LinkDB
All DBs
Position
Unknown
AA seq
1802 aa
AA seq
DB search
MSMRTGVCRAIALAALVFFTIVTNVDALGKCSGCSTPVKCNCTGIKGRPGAEGIPGQNGL
RGAPGDTGYPGGPGNKGEKGSDGGYGSTGDKGPRGDAGDRGPDGIPGRPGPTGDVGTAGP
EGLDGCNGTDGRPGPDGTRGYPGIRGPLGLEGDQGLRGEPGEGGGNSIGTKGDWGEFGYN
GLPGLDGPVGPAGLRGYQGAPGAQGLVGPQGPMGPRGDTGDYRKGEKGLKGQSGDQGSPG
GPGINTGNQEQGGADMQLLKGQPGDKGFKGDQGETGSKGYVGERGRPGLSGLKGATGYKG
ERGDDGPPGKQGRSGPPGQSGEKGYKGAPGYEGTPGIDGFAGERGEDGQPGTPGEQGREG
SPGLYDPFLDEIIEGAEGRQGPTGYIGLQGLSGLPGNPGHSGPIGPPGMPGPPGQMGFPG
IKGISIKGERGDDGPPGAPGRSGLPGITGPTGLAGEKGMKGETVIGPQGPSGVPGFGGFD
GPPGDRGDPGDRGFKGFPGIGPAIKGPKGYLGPRGRPGLVGDDGVPGFYGLPGMKGRRGD
DCGVCRPGRPGAKGDSGEPGRHGRPGPIGYEGLAGERGATGFPGKPGPPGLNGLDGTPGQ
PGETGRQGPAGTDGILVQPPFSATVPDLGEPGFTGFPGPMGPIGETGFQGPLGDRGPKGY
PGPPGDNGEAGLPGTDGIPGQPGVNGVKGDRHAIPKEFLVGDTGFKGYKGPKGERGATGA
PGKDGEIENFTDIRGDPGPQGPEGDSGYNGLNGSKGQRGDFGWPGPMGDPGPVGPSIPGP
EGLKGYPGIIGDEGPRGIPGEPGQPGLNGIPGSWGIKGDRGEPGQKILYGEMGLPGPTGM
KGEPGYDGPIGHAGIPGQPGLKGGKGSKGAPGYAGLPGSAGIKGQIGAFRQGPPGLTGQP
GDVGELGDWGDFGMKGDDGDLGINGLPGVKGDIGDIGFQGLPGAEGNPGLRGFDGLQGLE
GPMGDFGERGDIGYPGPAGPSGPKGLLGPRGYKGLRGNAGPDGFSGLPGEPGETGLMGES
GLPGLRGAKGESTFSGQKGEQGDFGVRGLPGFDGKPGLPGMKGILGDVGVTGVGSPGQRG
LKGEPGIPGLPGGFGFKGEIGEPGTAGAQGLIGDEGFPGPFGRPGLNGLTGPRGNRGEVG
TPGYSGSKGEGGMEGDPGFIGLPGQPGPDGGMGPIGPFGPKGLKGNRGPPGITLPGFAEK
GDIGNFGMFGLTGRKGQPGDTGVVGWPGSRGGQGRIGDKGIEGDAGTSGRPGLPGDAGVD
GPPGLPGQNPERGEPGTPGEDAHAGRPGRLGQKGAPGELGPDGLSGQRGPPGLSIQGIKG
ELGDAGFDGDRGSFGPEGRPGDDGLPGPAGLKGKIGEPGFGASAFKGQPGDIGFAGARGF
NGEKGEPGDDGLDGLEGPPGFPGEIGLKGDVGLRGFVGVQGFVGVKGIVGDWGYDGSIGE
EGDAGLPGIPGRLGLPGIEGRVGYPGSAGLTGSIGDVGEPGLPGFDGPKGLPGMPGLRGR
DGLRGRPGRQGPKGDAAEPAPLPQSRGFAVVRHSQAEIIPVCPRGTIKLWDGFSLLHVHS
EKRTHGQDLGAPGSCVRRFSTMPYLFCNLEDVCNYANTNDYSFWLSTTEPVPMTMTPIYG
NDIQKYISRCSVCEAPTRSIAVHSQTSEVPQCPNGWEELWIGWSFIMSTDGGGGGSTQSL
VSPGSCLEDFRTKPFIECHGHGRCNHYATALSFWLATIEEYAQFKKPVPQTLKSGFLTSK
ISRCAVCLRKIPTRPSNIISRDELARPSYNQSPYQFRNLGFRDRFAGRRRNRLQSTYNAR
QG
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgcggacgggtgtgtgccgggcaattgccctggcagccctcgtgttttttacg
atagtgaccaatgttgatgcgctggggaaatgttcaggctgtagcacgccagtgaagtgc
aactgcactggaataaagggccgacctggagcggaaggaattcctggacaaaatggactg
cgtggagccccaggcgacactggataccctggaggtccagggaacaagggcgaaaaaggc
tccgatggtggctatggatcaacaggcgataaaggaccacggggcgacgccggcgaccga
ggcccggatggtattcctggacgtcctggcccaactggggacgttggaactgcaggcccc
gaaggattggacggttgtaacggcactgatggaaggcctggacctgatggaaccagagga
tatccagggattcgtgggccgcttgggcttgagggcgatcaaggtctaagaggcgaaccg
ggagaaggcggcggcaattccattggaaccaaaggagattggggagaattcggatacaac
gggcttcccggtctggatggccctgtaggcccagcagggttgcgtggatatcaaggagcg
cccggagctcagggtctagtggggccccaaggtccaatgggacctcgcggagatacaggc
gactaccgcaagggcgaaaaaggtctgaaagggcaatccggtgatcaaggaagtccggga
gggcctggaatcaacaccggcaaccaagaacaaggaggagctgacatgcagttgctgaaa
ggccaaccaggagacaaaggctttaaaggcgaccaaggcgaaacaggctccaaaggctac
gtgggagaaagaggtagacctggcctatccggacttaaaggggcgacaggttacaagggc
gaacgtggcgatgacggcccgccaggcaaacaaggcagatccggccctcctggccaatca
ggagagaagggatataagggggcgccgggctacgaaggaactcctggaattgacggattc
gcaggtgagagaggagaagacggacaaccaggcactcctggagaacaaggcagagaagga
tccccgggtctatacgacccgttcctggatgaaataatcgaaggggctgaagggagacag
ggcccaactggctatataggcctacaaggtctttccggcctgcctggcaaccctgggcat
tctggcccgattggacctcctggaatgccaggaccgccgggccaaatgggctttcctgga
ataaaaggaatatccataaagggcgaacggggtgatgatggcccacctggtgctccaggc
cgatctggacttcccgggattaccggaccaacgggtttagctggtgaaaaaggaatgaaa
ggagaaacagtgatcgggcctcaaggcccatcgggagtgcctggtttcggcggtttcgat
ggaccaccaggagaccgaggtgaccctggcgatagaggatttaaaggatttccaggcatt
gggccagcgattaaaggacctaaaggatatttgggtccacgtggacgccccggcctggtc
ggagacgatggagtgcccggtttttatggcctgcctggaatgaagggcagaagaggcgat
gactgcggcgtttgtcggccaggccgcccgggggcaaaaggagacagtggggaacctgga
agacatgggcgtccaggtcccattggatacgaaggacttgctggtgaaaggggagcaacc
gggtttcctggaaagcctggacctcctggtttgaacggtttggatgggacgccgggacaa
cctggagaaacaggaagacaaggacctgcaggtacagacgggatcctggttcaacctcct
ttcagtgcaacggtacccgacctaggtgaacctggattcactggatttccgggacccatg
ggtccgattggagaaactggctttcaaggtcctttgggagatcgcggtcctaaaggctat
ccaggacctcctggtgacaatggagaagccggcttgcctggtactgatggtatacctgga
caaccgggcgtcaacggcgttaaaggtgaccgacacgccattccaaaggagttcctagtc
ggagatactggcttcaaaggatataagggaccaaaaggagaaagaggagccaccggtgct
cctggcaaagatggagagatagaaaatttcacggacatcaggggcgatccagggccgcaa
ggcccagaaggagattcaggttacaatggcttgaatggatcaaaagggcaacgaggcgat
tttgggtggcctggtcccatgggagacccaggaccagtagggccgtccataccaggtcca
gaaggactgaaaggatatccaggaattattggcgatgaaggtccgcgtggtatccctggc
gagccaggtcaaccaggccttaatggtatccctggatcctggggaatcaaaggagatcgc
ggggaacccggccaaaaaatcctttatggtgaaatgggtctccctggacctaccggtatg
aaaggcgagcctggatacgatggccctattgggcatgccggtattcccggacaaccagga
ctcaaaggcgggaaaggatcgaaaggagctccaggatatgcaggtttaccgggatctgcg
ggtattaaaggacaaattggtgccttcaggcaaggcccaccgggtctcactggccaaccg
ggcgatgttggagaactcggtgactggggcgattttggcatgaaaggagatgacggtgac
cttggaatcaatgggctgccaggagttaaaggagatatcggagacatcggtttccaaggc
ctgccaggggctgaaggcaatccgggcttgcgcggatttgacggattgcaggggctggaa
ggtccgatgggagactttggagagcggggcgacattggataccctggtcctgctggaccc
tccggccctaaaggcttgctgggaccaagaggttacaaagggttgcgaggaaatgccggt
ccagatggcttttctggcctgccgggcgagccaggcgaaacgggccttatgggagagtcg
ggattacctggacttagaggcgctaaaggggaatcaacattcagcggacaaaagggagag
cagggcgattttggcgttaggggcttaccaggttttgatgggaaacctggactaccaggc
atgaaaggcatcctaggtgatgtcggggtgacaggggttggatccccaggccaacgtggt
ttgaagggagaaccgggaattccgggtcttccgggaggtttcggatttaagggagaaatt
ggggagccgggaactgcaggcgctcagggtctaataggcgatgaaggattcccaggcccc
tttggtcgaccgggactaaacggattaactggtccaagaggcaaccggggtgaagtggga
acacccggatattcgggcagcaaaggagaaggtggaatggagggcgatcccggattcatc
ggtcttcctggacaacctggcccagatggaggcatggggccgataggccccttcggacct
aaaggtctgaagggcaaccgcgggccgcctggaataaccttgcccggctttgctgagaaa
ggagacattggcaattttggcatgtttggcttaactggccgcaagggacaaccgggtgac
acgggagtcgtgggatggccaggctcaaggggcggccaaggccgaattggcgacaaagga
atagagggagacgcgggaacatcaggccgtcctggactccccggcgatgctggagtagac
ggcccgcctggattgccgggccaaaatcccgagcgtggagaacctggaacacctggtgaa
gatgcccatgcgggccgaccaggcagattaggccagaagggcgctccaggagagttgggg
ccggatggtctgagcggacaacgaggtcccccaggcctttccatccaaggaatcaaagga
gagttgggcgatgctggttttgatggagacaggggatccttcggtcccgaaggacgacca
ggcgatgacggtctgccgggaccggcaggccttaaaggaaaaattggcgaacctggattt
ggcgccagcgcttttaaaggacagccaggagacatcggtttcgcaggagctagaggtttc
aacggagaaaaaggcgaaccgggagatgatggtttagatgggctggaaggcccaccaggc
ttccctggggagattggcctcaaaggagacgttggcctaaggggattcgttggtgtacag
ggcttcgttggagtcaaaggaatcgtgggagattggggatatgatgggtctattggagag
gaaggagatgcaggtttgcccggaataccaggacgtctaggactacccggtattgaaggc
cgtgtgggatatccgggaagtgcaggacttacaggctccatcggagatgttggggaacct
gggctgccaggctttgatggacccaaagggcttccgggaatgccgggacttcggggcagg
gacggcttgagaggacggccaggacgacaagggcctaaaggagacgccgctgaacccgct
ccgttacctcaaagtcgcggttttgctgtggtgaggcattcgcaggcggaaattattcca
gtttgccccagaggcaccatcaagctgtgggatggcttctctttactgcacgtccacagc
gaaaagcgcactcatggacaagatctgggcgcccctggtagctgcgttcgcagattcagc
acaatgccttatttgttctgcaatttggaggacgtttgcaactacgccaacactaacgac
tacagcttctggctgtcgacaactgaaccagtgccaatgacaatgacgcccatttatggc
aacgatatccagaaatacatttccagatgttctgtatgcgaggcgccgactcgatccatt
gccgtccacagtcagaccagcgaagttcctcaatgtccaaatggttgggaggagttatgg
ataggatggagctttatcatgagcacagacggaggcggtggaggatcaacgcaatctttg
gtatcgcctggttcctgcttagaggacttcagaaccaaaccgtttatagaatgccacggt
catggccggtgcaaccattacgctactgccttatcgttctggttggcgacgatcgaggaa
tatgcccagttcaagaagccagtaccgcagactttaaagtccgggtttttgacttcgaaa
attagtcggtgcgctgtgtgtttaagaaaaataccaactagaccgagcaacattatctca
cgagacgaactggcgcgaccttcttacaatcaatcgccttatcaattcaggaaccttgga
ttccgagaccgatttgcaggtagaagacgcaatagacttcaatccacctacaatgccaga
cagggctga
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integrated database retrieval system
