Dendroctonus ponderosae (mountain pine beetle): 109539365
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Entry
109539365 CDS
T04899
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109539365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109539365
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109539365
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109539365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
FHIPEP
PIN_8
Motif
Other DBs
NCBI-GeneID:
109539365
NCBI-ProteinID:
XP_019762621
UniProt:
N6U281
LinkDB
All DBs
Position
Unknown
AA seq
649 aa
AA seq
DB search
MAATRKLQGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRD
QIKSWIASGEIKDKSILMDNRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKE
KEEMQHWLSSSIDELSIQTDSFESEIEQLLSKGKKKLDKDKQERMDELKSRLERHRFHIQ
KLEALLRMLVNESVEVKQIKPIKDNVDYYIESWKEPDFEDNEFIYDDIIGLDEVELSGVG
LPSSATTDSNDTGGTPTSMISGSSPIASPGPSIPQNCSSFNHSIEPILPEEKKVVQKEVQ
QTPKPIKPTPIRATTTSFNTSLNTSLVISNVASTAPTMTSTPNKTAPAAREPSPVMSNLT
TVSNFAAVAANNINKSLNNVDVPPINVPQQVVTNLNVVPPKAPVEVQNVVPTIEPPAPPA
PIAITNPEPPPVIANGTDNNEKISDGMSTLKTMAQQVIDRAGLEAQPPQPQVILDPPRNH
SHVKTEAHIPPLLGVAPLGAVPLQKEHQTQFQLMESAFYHMPHPSDTERVRHYLPRNPYN
TPPYYIQAPLFNSDTLEFYQRLGTETLFFVFYYMEGTKAQYLAAKALKKQSWRFHTKYMM
WFQRHEEPKIINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaccagaaaactacaaggtgaaatagatcggtgtctaaaaaaagtgaccgaa
ggcgttgagactttcgaggacatctggcagaaagttcataatgccacgaatagtaatcag
aaggagaagtatgaggcagacctcaaaaaggaaatcaagaagttgcaaaggcttcgagat
caaatcaaaagttggatagcttcaggggaaattaaggataaaagtattttgatggataat
aggaagcttattgaaactcaaatggagaggtttaaagtggtcgaaagagagacaaaaaca
aaagcgtattcaaaagaaggattaggtgctgctcagaaacttgatccggctcagaaggaa
aaagaagaaatgcaacactggctaagttcgtccatagatgaattatcaatacagactgac
tcctttgaaagtgagattgaacagctgctatcaaaaggaaagaagaaactggataaggac
aaacaggaaagaatggacgagttaaaatctcgactcgaacgacatcggtttcacatacaa
aaactagaggctcttttaagaatgctcgttaatgaatctgttgaagttaagcaaattaaa
cctataaaggacaatgtagattactacatagagtcgtggaaagaacccgactttgaagat
aacgaattcatttatgatgatatcattggcctggatgaagtggaattgtctggtgtgggt
ttaccttcttcagctacaactgacagtaatgatacaggaggtacacctacatcgatgatt
tctggttcttcgccaattgcctctcctgggccaagcattccccaaaactgttctagtttt
aatcattccattgagcccatcttaccggaagagaagaaagtcgtgcagaaggaagtccag
caaacgcctaagcccatcaagcccacgccaattagagcaaccactacgtcctttaatacg
agcttaaatacatcgttggttatttcaaatgttgcgtccacagcgcccacaatgaccagc
acgcccaataaaacagctccggccgctcgagagccttcgcctgtgatgtctaatttgacg
actgttagcaatttcgctgccgttgccgcaaacaacattaacaagtcgttgaacaatgtg
gatgttccgcccatcaatgttccacaacaggttgttactaatctgaacgtggtcccacca
aaggcgccggtggaagttcaaaatgttgtacctactattgaaccgccagcgccgccagca
cccatcgccatcaccaatcctgaacctccgccagttattgcgaacggaactgataataat
gaaaagatctcagatggtatgtcaacgttgaaaacgatggcacaacaggtgatagacaga
gcgggcttagaagcacaaccgccacaacctcaagtaattttagaccccccaaggaaccat
agtcatgttaaaacggaggctcacatacctcccctgcttggtgtggctcctcttggcgct
gttcctctacaaaaagaacatcagactcagttccagctgatggagtctgccttttatcac
atgccacatccgtccgatacggagagggttcgacattatctgccgaggaatccttataat
acacccccatactatatacaggcgccattatttaattcggacactttggagttctaccaa
cgactgggaacggaaacgctatttttcgtcttttactatatggagggaactaaagctcaa
tacttggcagctaaggcgttgaagaaacaaagttggaggttccacacgaagtacatgatg
tggtttcaacgacatgaggagccaaaaattattaacgaggagtatgaacagggcacctac
atttactttgattacgaaaaatggggacagagaaaaaaagaaggatttacatttgaatat
aagtatctagaagatagagaccttaattaa
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