Dendroctonus ponderosae (mountain pine beetle): 109539788
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Entry
109539788 CDS
T04899
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03013
Nucleocytoplasmic transport
dpa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109539788
03015 mRNA surveillance pathway
109539788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109539788
Enzymes [BR:
dpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109539788
5.6.2.5 RNA 5'-3' helicase
109539788
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109539788
mRNA cycle factors
Common to processing body (P body) and stress granule
109539788
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
ATPase
NPHP3_N
AAA_16
nSTAND3
AAA_22
SRP54
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
109539788
NCBI-ProteinID:
XP_019763333
UniProt:
N6T516
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSECDFTDFTIPSQTQASQHDHAGPKVQAVQ
MNNNISKIVTTTQILGELQFEEEDEEFYNSRELPDFACKYCGIHEPHCVVMCNICKKWFC
NGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETILECYSCGVRNVFVLGFIPAKADSVV
VLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLTWLVKIPSEQEQLRARQISAQQINKL
EELWKENVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQT
QENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEVHKSWAGVGHVIKVPD
NYGEDIGIELKNGSGAPTECTSNFVVDFIWKSTSFDRMQLALRKFAVDDTSVSAYIYHRL
LGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATI
VYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKTDLKVVRLCAKSREAIDSPVSFLALHNQI
RKMEGNTELQKLQQLKDETGELSSMDEKRYRMLKKLAEKELLEAADVICCTCVGAGDPRL
IRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQSLF
ERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERKLLKIDFPWPIQDRP
MFFLVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRAGIKPEQIGVITPYEGQRAYLVQ
YMLYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTR
AKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLTNMKESLIQFAKPKKLTNSDNP
GSHFMSTSMFDAREAMVPGSVYDRTNSNMNGNGPFGNLGTGFQPNRPMQMDMFGRTHDPI
GYIAPDRAQTGLTLPVPLGMFMNMAHVPPRFYNQHQQAMQAREQQQNPRGQNRRPPQRQK
SKNLSQDQTQPFSQSLQFTQGGMSQPGLSQPGFSLSQPGLSQAELSQDLYMAEYQSQMDG
LLSQDSTYQGDRSAFYQPSAQFSQPY
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggaccgagctcccaaacgctcacgtttttggacactgaagag
gctgatttgattggggctgacacccagggctccgaatgtgactttacggatttcacgatt
ccttcgcaaacgcaggcttcgcaacacgatcatgcaggccccaaagtacaagcagtgcag
atgaacaacaacatcagtaaaatcgtaacaaccacccaaattcttggcgaactgcaattt
gaagaggaggatgaagagttttacaacagccgagagctgccagactttgcctgcaagtac
tgcggcatccatgagccccattgcgttgttatgtgcaacatttgcaaaaagtggttctgc
aatggcagagggaacacgtccggaagccatataattaatcatttggtccgagctaagcat
aaggaagtgactctgcacagagacggtcccttaggggaaaccatattggaatgctacagc
tgcggagtgaggaatgtttttgtgttgggatttattcccgccaaggccgattcggttgta
gtgctgctttgcaggcagccttgtgcggcacagaattcccttaaggacatgaactgggac
caagaacaatggaagccactgattgcggatcgctgctttttaacatggctggtaaagatt
ccttcagaacaggagcagcttagggcccgtcagatttccgcccagcaaatcaacaagctg
gaagagctttggaaggaaaatgtcgatgcaactttccaggatctggaaaagccaggcgtg
gacgaggaacctcaacaggttttgctccgttatgaggatggctaccagtatcagaatatt
ttcggtcccctggtaaagttggaggctgattatgataagaggttgaaagagtctcagacc
caggaaaacatcgaagtcagatgggatgttgggctaaataaaaaaaccatcgcatatttc
actcttgccaaaactgacggcgacatgaaactgatgcatggggatgagttacgactaaga
tacgttggcgaggtgcataaatcatgggccggagtaggtcatgtgattaaagtgcctgac
aactatggagaagatataggaatcgagctgaagaacggctctggagcccccactgagtgc
acaagcaattttgtggtagactttatatggaagagcacaagctttgatcgaatgcagttg
gctcttcgaaaatttgcagtggacgacacgtcagtgtcggcctacatctatcaccgtttg
ctcggtcatgaagtcgaagaagtcttgtttcgctgtcatttgccgaagcatttttctgcg
cctaatttgcccgatttgaaccggtcgcaagtgtatgcagttaaacatgccctgcaaaga
cccttgtctctcattcaaggcccaccaggaaccggcaaaactgtgacatcggccaccatc
gtgtaccaattggtgaaacaaaatgggggccctgttttggtatgtgccccaagcaacacc
gcagtggatcaactgacggagaagatccacaaaaccgacctaaaggttgtaaggttgtgc
gccaagtcgcgggaagctatcgattctccagtcagtttcttggcgctccacaatcaaatc
agaaaaatggaaggcaacacagaactgcaaaaattgcaacagcttaaagatgaaaccgga
gaattatccagtatggatgagaaacgatacaggatgttgaaaaaactggctgaaaaagaa
ttgctggaagcggctgatgtaatttgttgtacatgtgttggtgctggtgatccccgtttg
atcagactcaagtttcattcaattttaattgatgaaagcatgcaggccactgaacctgag
tgtatggtgccagtcgttctgggagtaaaacagctgattttggttggagatcattgtcaa
ttaggaccagtggtgatgtgcaagaaagccgcaagagctggcttatcacagtccctattc
gaacgactggtggttctgggtattaggccttttagattggaggttcagtatcgaatgcac
ccagaattatcccggtttccatccgatttcttctatgaaggaagtttgcaaaatggtgtt
agcgctgaagaacggaagctgttgaaaattgactttccgtggcccattcaagataggccg
atgttcttccttgtgacgcaaggccaggaagagattgccggtagtggaaccagttatctg
aacagaactgaagcttccaatgtagaaaaaatcgctaccaggtttttgcgagccggcatc
aaacccgaacagatcggagtcattacaccatatgagggacaacgggcttatctggtacag
tacatgctctatcaaggatcactccatagcaagctctatcaggagattgagattgcgagt
gtagacgcctttcagggaagagagaaagacattataatcatgtcctgtgtccggagtaac
gagcatcaaggaatcgggttcctgaatgatcccaggcgtttaaatgttgccttaaccaga
gctaaatatggcattatcattgtaggaaatccgaaagttctttcaaagcaacccttatgg
aaccatctattgtctttttacaaggaacaaaaggttttggtggaaggcccattgacaaat
atgaaggagtctctgatacaattcgccaagccgaaaaaactgaccaactcggacaatccc
gggagtcactttatgtctacgtcaatgttcgatgcccgggaagcgatggttcccggttct
gtatatgatagaacgaattctaatatgaatggaaacgggcctttcggtaatttgggtact
ggttttcaaccaaaccgcccaatgcagatggacatgtttggtcggactcatgaccccatt
ggctacattgctcccgacagggctcaaacgggtctgactttgccggtgccattgggcatg
ttcatgaatatggcacacgttccgcccagattctacaatcagcaccaacaggcgatgcaa
gcccgggaacaacagcaaaatcccagagggcaaaatagacgaccgcctcaaaggcagaaa
agtaagaacctaagtcaggaccagacgcagccgttcagccaaagtcttcagtttactcaa
ggcggcatgtcccaaccaggactatcccaacctggcttcagcctttcccaaccgggcttg
agtcaagccgaactcagccaggatctgtatatggccgaatatcaaagccaaatggacgga
ctgctgtcgcaagactcgacttatcagggtgataggtccgcattttaccaaccgagcgct
cagttttcgcagccgtactga
DBGET
integrated database retrieval system
