Dendroctonus ponderosae (mountain pine beetle): 109542484
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Entry
109542484 CDS
T04899
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109542484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpa03041
]
109542484
Spliceosome [BR:
dpa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109542484
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
PRP4
Beta-prop_EML
Beta-prop_EIPR1
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Ge1_WD40
Beta-prop_HPS5
WD_LRWD1
WD40_like
Beta-prop_WDR75_2nd
WD40_RFWD3
WDR54
Nbas_N
Motif
Other DBs
NCBI-GeneID:
109542484
NCBI-ProteinID:
XP_019767288
UniProt:
J3JTE5
A0AAR5Q221
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MSDDEVSYAKKIKTIHYGSLEDAERARLENTHDDGKSDTSDSDSGVPPPQHEGNNEYMEL
EEAMSRDKQALLEEFERRKKARSINVSTDDGEVKRNLRQLGEPICLFGEGPAERRSRLRD
ILSRLGEDSVIRREAEEERKLYEKDQEQTWYHEGPESLRIARLWLADYSLPRAKARLAEA
RSLMELPATTKTAKFQELQKKLQQMAIHSSQIGDNRPISYCTFSPNSKLLATASWSGLCK
VWSVPDCELKQTLKGHACNVGAIVFHPKATISQPENVCNMASCAADGSVKLWDLKGEEPI
ADIEGHIPHRVSRISFHPSGRFLGTCCFDNSWRLWDLEQCTEVLHQEGHVKPVYCMSFQT
DGSVCASGGLDSFGRVWDLRTGRCIMFMEGHLKAIYGIDFSSNGYNIATASEDNSCKIWD
LRKRASLYTIPAHNNLISDVKYQKEDGNFLVTASYDGKVKIWTNKTWQPLKTLSGHDGKI
MSCDISADNNYIATSSYDRTFKLWGPE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgacgaagtaagctacgcgaaaaaaatcaaaacaatccactacggatcgctg
gaagatgccgaaagagcccgcttggaaaatacccacgatgatggtaaaagtgatacctct
gattcggactcaggagtgcctccgccccagcatgaaggtaacaatgagtatatggaactt
gaggaagcaatgtccagagacaaacaagcactgcttgaggaatttgagagacgcaagaag
gcgcgttctattaatgtgtccactgatgatggcgaagtgaaacgtaatctccgacaattg
ggagaacccatttgcctgtttggagaaggcccggcggagcggcgtagtcgtttgagggac
attctgagtagattaggcgaggattctgttataaggagagaagccgaggaagaaagaaag
ctgtatgagaaagaccaagagcagacctggtaccatgaaggtccggagtcgttgagaatc
gctagactatggctagctgactattcgttacccagagccaaggccagacttgcagaagca
aggagtttaatggaattgccagccaccactaagacagccaagttccaagaattgcaaaag
aaactccagcaaatggcaattcactcctcccaaattggagacaatcgccctatttcttat
tgtacattttctcccaactcaaaactgttggctactgcatcttggagtggtttgtgcaag
gtttggtcagtacccgactgtgagctgaagcagactctcaaaggtcatgcgtgtaatgta
ggggctatagtattccaccctaaagccacaatatcacagccggaaaacgtttgcaatatg
gcgtcgtgtgctgcagatggctcagtgaaactatgggaccttaaaggagaagaaccgatt
gctgatatagaaggccatattcctcatagggtatcgagaataagttttcatccttccggg
cggtttttaggcacttgttgcttcgataactcttggaggctttgggatctggaacaatgc
accgaagtgttacatcaagaaggacatgtgaagccagtttactgcatgtctttccaaact
gacggatcagtttgtgcgtctggcggacttgattcatttggacgagtatgggacttacgc
acaggaagatgcatcatgtttatggaagggcatctgaaggcaatatatggtattgacttt
tcgtcaaacggttacaacatcgccacagcaagtgaagacaacagttgcaaaatatgggat
ctaaggaagcgcgcatctctctacacgattccagcccacaataatttgatttcggatgtg
aagtatcagaaagaagacggcaatttcttggtgaccgcatcgtatgacggtaaagtgaaa
atttggaccaacaaaacgtggcagccgttaaagacactttcaggacacgatggtaaaatt
atgtcctgtgatatttccgctgataataattacatagcaactagttcatatgatagaacg
ttcaaactgtgggggccggaataa
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