Dendroctonus ponderosae (mountain pine beetle): 109542510
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Entry
109542510 CDS
T04899
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03013
Nucleocytoplasmic transport
dpa03015
mRNA surveillance pathway
dpa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109542510
09122 Translation
03013 Nucleocytoplasmic transport
109542510
03015 mRNA surveillance pathway
109542510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109542510
03041 Spliceosome [BR:
dpa03041
]
109542510
Enzymes [BR:
dpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109542510
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109542510
Spliceosome [BR:
dpa03041
]
Complex C
Other components
EJC/TREX
109542510
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109542510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109542510
NCBI-ProteinID:
XP_019767315
UniProt:
J3JZ95
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADAEDLLDYEDEEQTEQTVHEAETQETKKAVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVVYVLVMCHTR
ELAFQISKEYERFSKYMPSIKVGVFFGGLPIQKDEEMLKNNCPHIVVGTPGRILALVKSK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIYRNTPHGKQVMMFSATLSKDIRPICKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVAL
AQLLTEQNFPAIGIHRGMDQKERLSRYEQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITFVSEESDAKILNEVQDRFDVNITELPDEIDLSSY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctgaagatcttctcgactatgaagatgaagagcagactgagcaaactgta
catgaagccgaaactcaagaaaccaaaaaggcagtaaagggcacatatgtatctattcac
agttcgggattccgagacttccttcttaaaccggaaatactgcgagccatcgtggactgc
ggatttgaacatccatctgaagttcaacatgaatgtattccacaagctgttcttggtatg
gacattctatgtcaagccaagtctggtatggggaaaacggcggtattcgttctcgccaca
cttcagcagctcgaacccactgaaaacgtggtgtatgttctggtaatgtgccacacgagg
gaactagctttccaaatcagcaaggaatatgaacgattcagcaagtacatgccaagtatt
aaagtgggtgtcttctttggtggcctgccgattcaaaaggatgaagaaatgctgaagaac
aattgccctcacattgtggttggtacgcctggcaggatattggctttggtcaagtcgaag
aaactcaatttgaagcatttgaaacatttcattttggatgaatgtgataaaatgctagaa
ttgttagatatgaggcgtgatgtacaagaaatctacagaaacaccccacatggcaaacaa
gtgatgatgttcagcgccactttaagcaaagatattcgaccgatctgcaagaagtttatg
caagatcccatggaagtatatgttgacgatgaagcaaagctgacgttgcacggtcttcaa
cagcattatgtaaaactgaaggaaaatgagaagaacaaaaaattatttgagctgctggat
gttctggaatttaaccaggttgttattttcgtgaaatctgttcaaagatgtgtggcactg
gcgcagctacttactgaacaaaatttcccagccataggcatccacagaggaatggatcag
aaagaaagactgtctcgatacgaacaatttaaggattttcaaaagaggatattggttgcc
acgaatttattcggtagagggatggacatagaacgagtcaacattgttttcaactacgac
atgccagaagattccgacacctacctgcatagggttgccagagctggtcggtttggaacg
aaaggattggcaattactttcgtgtcagaggaaagcgacgctaagattctgaacgaggtt
caggatcgttttgacgtcaacatcacagaattgcccgatgaaatcgatctcagttcttac
attgaaggacgatga
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