Dendroctonus ponderosae (mountain pine beetle): 109543105
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Entry
109543105 CDS
T04899
Name
(RefSeq) collagen alpha-1(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109543105
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dpa00536
]
109543105
Glycosaminoglycan binding proteins [BR:
dpa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109543105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
I_LWEQ
Motif
Other DBs
NCBI-GeneID:
109543105
NCBI-ProteinID:
XP_048517147
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MRFRNKLRDGGPKYWKLWFAYWAWLIQQSYGQKDVSTIVDILKLADLKSAPQAIRPTEGP
CWNTTATDKEQWAYRWSNRAEISLSTENAFPGGFPTDFSILIIARPINDQSFPLLTLYSE
VGDEQLSITIGREVSLYYEDEDEKPVEGNYINFGISAADNRWHTMAFSVKGDSVTLIYDC
YTTITKVLARDSSSTLNNKGLINVGYQLLADGHYEGDISLLQIADRPDEAYDFCKKAAAC
LKQYRFVNSSKSKIAEESFNAEVSMFSSDHKDGFSNGAPIVFSNGESKLGTEHLSENFDN
LIGPNLNQSESAQLNGLEMTTIVVENITHSHGETYMTTTASTAEQNYYNPHSPRGYPGPP
GLPGPPGPKGDPGRKGLDGTSGISGPPGHVFMIPINQHGTEKGPDQGVEAFRQMLSQHMV
SMRGIEGPRGLTGLPGPQGLTGPDGQKGEPGDIGETGPRGTAGIPGPLGHQGRRGQPGRD
GERGLTGPSGAKGEQGLIGLPGLPGDKGDRGLPGATGETGFPGHDGMPGEDGPSGSPGLP
GEIGPRGFSGPRGMPGLPGNPGIPGSEGPVGSKGQQGPSGQPGAPGQTGSPGPVGPHGPQ
GPLGPPGIAGPPGKQGIPGLTGAEGLPGISGKPGTVGSKGEMGLPGPQGSIGFPGSRGIK
GDEGKRGTGGERGDKGDRGLDGEKGDNGPKGDVGPQGVQGAAGLEGPEGPKGFDGPRGET
GQIGSPGEKGKEGLRGFPGYSGAAGDKGEKGASGKHGSPGEKGERGNPGQPGERGESGPR
GFRGMRGRRGQEGQPGPKGDTGQPGPPGPQGEVGPSGNEGVRGFTGAVGPPGNNGKDGAT
GPPGERGPPGETGSRGSIGLPGVIGPPGNAGELGPIGEPGAPGPSGIPGEPGPPGDSGKE
GPPGPTGPEGKAGLPGPVGLSGFPGERGHNGLTGMPGLKGDTGATGLPGPQGDKGAQGEP
GLLGSQGVEGRKGPPGTRGPGGAKGERGDQGLPGPIGRDGVAGTRGLPGAPGPVGLPGED
GDKGDMGPPGEKGFKGSKGESGPLGSAGPPGIRGEPGQQGPVGERGLPGEIGRRGIKGEQ
GSMGLSGPAGATGPQGLPGPPGVKGEIGDMGQKGPSGASGPPGEQGVRGPKGVEGLPGPV
GPEGPQGVKGENGPAGLTGQRGKDGLPGSVGPLGPKGDSGKIGLQGVPGPRGLPGSEGMQ
GAPGFPGLPGPQGQTGTPGLKGEPGLDGQDGKTGPVGPSGELGPGGPMGPTGPPGRPGQE
GAAGLQGNTGLPGEKGDLGTIGIPGRPGNPGPQGQPGSQGPPGLRGTPGLTGENGAPGAP
GLAGSSGQIGQPGPRGHKGDRGRRGPKGHRGEVGFNGLKGDEGVIGETGPKGERGPEGPK
GNTGIIGPQGLKGSDGPQGLLGEDGPSGPKGSEGAAGQKGETGPTGPAGPPGPPADMPLI
PPELLFQIQESGSNKGVTRRRRAVVELLSEFERKINEQQENINNSQESDSINKNDINVQF
MDMYTSIYAMRMQLENERKPLGNRENPAKTCRDLYYSQSHYSDGWYWIDPNLGMSDDAIY
VFCNMTDEGETCIYPDQYSASMPNIPWKRKGTVQKWFSEFEKGSKITYEGVGMAQMAFLR
LSSEQGYQNFTYSCLNAVAWYDTSSHTYDMGIRLLGSSGQEFSYKGLRPEVRADECKARQ
GKSKTVFEIRTRQIDQLPLTDFLPIDYGESNQAFGFSVGPACFK
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgcggtttcggaataaattaagagacggcggtccaaaatattggaaattgtggtttgct
tattgggcgtggttgatacagcagtcgtatgggcagaaggacgtatccactatagtcgac
attttgaaactggccgatctaaaatctgcacctcaagcaattagacctactgaagggcca
tgttggaatacaacagcaactgacaaggagcagtgggcgtacagatggagcaatagagcc
gaaatttctctcagcaccgagaacgcttttccgggaggttttcctacggatttttccatc
ctgataatagcgcggccaataaacgaccaatcatttccgttgttgactctctacagtgaa
gttggggatgagcaactatctatcactataggtagagaggtgagcttgtactatgaagat
gaagatgagaagccagtagaaggaaactatataaattttggaatatctgcagctgataat
cgctggcacactatggcatttagtgttaaaggcgactcggtgactttaatttacgattgt
tacacaactataacgaaagttctagcaagagattcgtcttcgactttgaataataaaggc
ctgatcaatgttggctatcagttattggcagatggacactatgagggtgatatttctcta
ctacaaattgcagaccgtccggatgaagcttacgacttttgcaaaaaagctgcagcttgt
ttgaaacagtacagatttgtaaatagcagcaaatccaagatcgctgaagaaagtttcaat
gcggaagtgagtatgttttcatcggaccataaagacggattcagcaatggagcaccgatt
gtattttctaacggtgaatccaagttgggcactgaacacctttcggaaaacttcgacaat
ttgattggacccaacttaaatcaatcagaatcagcacagttgaatggtctagaaatgaca
actatagttgttgagaatataacgcattctcatggcgagacttatatgacgactactgcc
tcaactgcagagcaaaattactacaatccccactcacctaggggttatccggggcctccg
ggacttccgggacctccaggcccaaaaggcgatccaggacgaaagggactggacgggact
agcggaatttctggccctcctggacacgtgtttatgatccccataaaccaacatggcact
gaaaaaggacccgatcaaggagtggaagcatttagacagatgctgtcgcagcacatggta
tcaatgagaggtatcgaggggcccagaggactcacagggcttccaggacctcaaggactc
acaggacccgatggtcaaaagggcgagcctggagacattggagaaacgggccctcgaggg
actgccggcattccaggacctctaggccatcaagggcgacgcggtcaacccgggagagat
ggagaaagaggcttaacaggtccatctggagcaaaaggagagcagggattgatcgggctg
cctgggcttcctggggacaaaggagaccgcggcctgcccggagcaactggtgagacggga
tttccaggtcacgatggcatgcctggcgaggatggtccctctggatctccaggccttccg
ggagaaataggtccgaggggtttttccggcccaagaggcatgccgggactgcctggcaac
ccgggaatacctggaagcgagggacctgtaggaagcaaaggacagcagggacccagcgga
caaccaggagcgccgggtcagacaggatcaccgggcccagtgggtccacatggaccgcag
gggcctttggggccacctggaattgccgggcctccagggaagcagggaataccaggctta
acaggcgccgaaggcttaccagggatttccggaaaaccaggaactgttgggtcaaaaggg
gaaatggggttgcccggtccacaaggttcaattgggtttcctggatcacgaggcattaaa
ggcgacgagggaaaacgtggaaccggaggcgaacggggcgacaagggtgaccgcggatta
gacggagagaaaggagataacggacccaaaggggatgtgggtccgcaaggagtacaagga
gcagcaggtttagaaggacctgaaggccccaaaggttttgacgggccaagaggggaaacc
ggccaaattggctccccaggagagaaaggaaaagaaggtctccgaggatttccgggatac
tcgggagcagccggtgacaaaggcgagaaaggagcttctggaaagcatgggtcgcctggt
gaaaaaggcgaaaggggaaatcctggtcagcctggagagcggggcgaatcgggacctcga
ggcttccgaggtatgcgaggtcgtcgtgggcaagaaggccagccaggacctaaaggcgat
accggccagcctggacctcctggtcctcagggcgaagtgggaccttccggaaacgaaggc
gtccgaggatttactggagctgttgggccacccgggaataatggaaaagatggcgccaca
ggtcctccaggagaacgaggaccaccgggagaaactggttcgcgaggatcaataggactt
cctggagtaatcggacctccaggcaacgctggcgaacttggtcctataggtgaaccggga
gctcctggcccttcggggattcctggtgaacccggaccacctggcgacagcggcaaggag
ggcccaccaggccctactggtcccgaaggaaaggctggattgcccgggccagtaggtctt
tctggatttcctggagaacgtggtcataacggacttactggaatgccaggcttgaaaggg
gatacgggcgccacaggtctaccagggccacagggagacaagggggcgcaaggggaaccc
ggcttactcgggtcgcaaggtgttgaaggtcgaaaaggtcctccgggtactcgtgggccg
ggaggtgcaaagggagaaagaggcgatcaggggcttcctggacccataggcagagatggt
gttgcggggactagaggcttaccgggggcaccagggccagtaggccttcctggcgaagac
ggagataaaggagacatggggcctcccggcgaaaagggattcaaaggatcgaaaggagaa
tcgggtcctctaggaagtgcgggtcctcccggaattcgaggagagcctgggcagcagggt
ccagttggcgagcggggtttgccgggggaaatcggccgccgaggcataaaaggagaacaa
ggttctatgggtttgtctggacctgcaggagccactggcccgcagggactgccggggcca
cccggtgtaaaaggagaaataggcgatatgggtcaaaaaggaccttcgggtgcttcaggg
ccaccgggagagcagggtgttaggggacctaaaggggtagaagggttgccaggacctgta
ggaccggaaggccctcaaggggtgaaaggcgaaaacgggccggcaggccttaccgggcag
cgaggaaaagatgggctaccaggtagcgtgggtcctttggggccaaagggagactctgga
aaaatcggccttcaaggcgtacctggaccgcggggcctgcccggttcagaaggcatgcag
ggagctcctggctttccaggattacctggaccccaagggcaaacaggtacccccgggttg
aaaggagaacccggattagatggacaagacggaaaaacgggccctgttggccccagcggg
gaattaggacccggaggtccgatggggccaaccggaccgcctggaagaccaggacaagaa
ggagccgccggtctacaaggaaatactggactgccgggcgaaaaaggagatctcgggact
atcggcatccctgggcgtccaggaaatccgggaccccaaggacagccagggtcacaaggc
cctcccggacttcgaggcactccaggattgacgggtgaaaatggtgcacctggggctcct
ggtctagctggatcttcgggtcagatcggtcagcctggaccaagagggcacaagggcgac
cgagggcgacgaggcccgaagggccatcgcggagaagtaggtttcaacggactaaaagga
gacgaaggggtaataggagaaacaggccctaaaggcgaaagaggcccggaaggaccaaaa
ggaaatactggcatcattgggccacaaggtttgaaagggagcgatggtcctcaagggttg
ctgggagaagatggcccatcaggaccaaaaggatcagaaggagctgctggtcaaaagggc
gaaacgggcccgacggggccggcgggcccacctggtcctccagcggatatgccactgatc
cctccggagttgctgttccagatccaagagtctggttcaaataaaggagttaccagacgt
aggagagctgtggtggaattattatcagaatttgaaagaaaaattaatgagcaacaagaa
aacataaataattcgcaggagagcgattcgattaataagaacgatatcaatgttcaattt
atggatatgtacacgagtatttacgcgatgagaatgcagctggaaaatgaacggaaacct
ttgggaaatagagaaaacccggcgaaaacatgccgagatttgtattacagccaatcgcac
tacagcgacggttggtactggatagaccccaatttgggtatgagcgacgatgctatttac
gtgttttgcaacatgacggacgaaggagaaacgtgcatttatcctgaccaatacagcgct
agcatgcccaacattccatggaaaaggaaaggtactgttcaaaaatggttctcggaattt
gagaaaggttcaaagataacatacgagggcgtgggcatggcccagatggcattccttcga
ctgtcatcagaacagggataccaaaactttacttactcatgtttgaatgcagtcgcctgg
tacgataccagcagccacacatacgatatggggattcgattattaggaagtagcggacaa
gaattttcctataaaggcttgagacccgaagtgcgagcggatgaatgcaaggctcgacag
ggtaaatccaagacagtctttgaaattcgaacgaggcaaatagatcagctgcctttgacg
gactttcttccaatcgactacggggaatctaatcaggccttcggattttctgtcggccct
gcttgctttaagtga
DBGET
integrated database retrieval system
