Dendroctonus ponderosae (mountain pine beetle): 109544142
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Entry
109544142 CDS
T04899
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109544142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109544142
Enzymes [BR:
dpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109544142
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109544142
mRNA degradation factors
3'-5' decay
Ski complex
109544142
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
ATPase_2
Motif
Other DBs
NCBI-GeneID:
109544142
NCBI-ProteinID:
XP_019769742
UniProt:
A0AAR5Q938
LinkDB
All DBs
Position
Unknown
AA seq
1196 aa
AA seq
DB search
MTSLDVPPIFSDTMEELEKYLLCPERLSIHQYKKNQQFWPRKAQPVELLCVDGASPSTTL
RVQRDLDTGQILQFHEVPLDSVGANARNSMSFNREPAPPDEAVRGNSSSIPFQPISFPEP
TLNLPKRNRLLDNSELLVVPPGFSRGLAFAEDGRSLIKESADQPQVPLGATINLLELIHQ
EEELLGAFEQKKEESELEETVPSTELLPEEQEVLPKEVQVLNISVQPPSALLCGGSEWAI
PLDPNQKITDFEKKVPDMAKKFPFELDNFQKLAIMQLEQHNHVFVAAHTSAGKTVVAEYA
ISLSQKHMTRTIYTSPIKALSNQKYRDFKEEFKDVGLITGDFQINQKASCLIMTTEILRS
MLYCGSDITRDIEYVIFDEVHYINDRSRGHVWEQVLIMLPKEVCVVLLSATVPNTLEFAD
WLGRTHKRKVYVITTTKRPVPLQHFLYTGRWGGSRNNKFLIMDAEKWQPKGYFEATGALE
RFKEPNIRFLNKQQEKTLWTSLADHLLKFELLPVVAFIFSRQRCDTNADILSHLDLTTQR
EKSYIHQFFNKCVRSLKEPDRNIPQIVKMRDILSRGIGVHHSGVLPIVKEIVEMLFQQGL
IKILFATETFAMGVNMPTRTVIFDSIRKHDGLEQRNLLPAEYIQMAGRAGRRGKDDKGTV
LILCKLNVPPEGDLKQMMTGKPSKLVSQFRLTYGMVLSLLRVESLTVEQMISKSFGEADH
QKNAPELDEELQRTEQKLQDLHKQSLSSYLQPLTKFFDAANLYLKKRMELMPKLVAVAKV
QKVLLPGALIVITKKGHINKLALIISKKLSQYMALVLTDPSEADSGGNTNDDSWYHMLAL
AEDTLFLPSSKPSHTVLKLNAEDIFEISSKSLKLDTKLVESDWEKRQMERFKSNPPGETC
MQAVQELQKLTLLANESKTSLALVHFVRDLNVNGQDLYFDLVEMYEAKDKLIDHLPSTRI
PNFQEQFGAVFERKFLEEKKKDLEYQLSTPSLALYPDYKNRIELLKTLGYVDGENTVKLK
GSVACEMGMNELLITELVVDDIFVDLKPPEVAALLSCLVFQVKLRGDPSEYEPQLTPKLK
KGIRLIKSVHQKIANMELALGIQTEEFQNELNVGLVHVVYRWANAEPFAEIMKLTEIQEG
IIVRCIQQLNETIMDVRDAAKIIGNPALRTKMEEASAAIKRDIVFAESLYTQDEKL
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgctggacgttccgccgattttctcggacaccatggaagagctggaaaagtac
ctgttgtgtccggagcgcctgtcgattcaccagtacaagaaaaaccagcagttttggccg
cggaaggcgcagcccgtggagctgctgtgcgttgatggggcttcgccctccactaccctt
agagtgcaaagagacctggataccggccagatcttgcaattccatgaagtgcccctggat
tctgtaggagcaaacgctcgcaactccatgtcttttaaccgggagcccgcccctcctgat
gaggcggtgcgaggcaactcctccagcatcccgttccagcccatcagctttccagagcca
accctcaatctgcctaaacgcaaccggctactggacaattccgagctgctggtcgttccg
ccgggcttcagcagaggcctagcatttgctgaagatggccggagtttgatcaaagagagc
gcagaccagccccaagtgcccttgggggccactatcaatcttctagagctgatccatcaa
gaggaggaacttttaggggcgttcgagcagaaaaaggaggagagcgaactggaggagacg
gtgccaagcacagaactgctgcccgaggagcaggaggtgctccccaaagaggtccaggta
ttgaacatttccgtccaacctccatctgcgttgctgtgtggcggcagcgaatgggccatt
cctctggaccccaaccagaagatcacggactttgagaaaaaagtccccgatatggccaag
aagttcccgtttgagctggataacttccagaaactggccatcatgcagctggagcagcac
aatcacgtttttgtcgctgcccatacgtcagctggcaaaactgtggtggccgagtacgca
atttccctttcgcaaaagcacatgaccaggacgatttacacctccccaatcaaagcgttg
tccaatcagaagtaccgcgacttcaaggaagagtttaaggacgtaggcctgataacggga
gacttccaaatcaaccaaaaggcctcctgcttgattatgactacagagatattgcgctcc
atgctgtattgcggcagcgacattaccagggatattgagtatgtgatttttgatgaggtg
cattatataaacgaccgcagcaggggccatgtatgggagcaagtgctcataatgctgcca
aaagaagtttgtgtggtcctgctgagcgcaaccgttcccaacactctggaattcgccgac
tggctgggccgaacccataaaaggaaagtctatgtgatcaccaccacaaaacggccggtt
ccactgcagcatttcctctacactggccgctggggcggcagcagaaacaacaaattcctg
attatggatgcggaaaagtggcagcctaaaggctactttgaagctaccggggctctggag
cgcttcaaggagcccaacatccgcttcctgaacaaacaacaggaaaaaacgctctggacc
agtctggcggaccatttgctgaaattcgagctgctgccagtggtggcctttattttctct
cggcaacgatgcgatactaatgccgatattctgtcgcatctcgatctgaccacgcagcgc
gaaaagtcctatattcatcaattcttcaacaaatgcgtccggtcgctcaaggagcccgat
cgcaacattcctcaaatagtgaaaatgcgcgacatcctgagcagaggcattggcgtccat
cacagtggcgtactgcccatagtcaaggagatcgtcgaaatgctcttccagcaaggcttg
atcaagattctcttcgccaccgaaacattcgcgatgggcgtgaacatgcccacaaggacc
gtaatattcgactctattcgaaaacacgatggacttgagcagcgcaatctactcccggcc
gagtacatccaaatggccggcagagcgggcagacgaggcaaagacgacaaaggcaccgtt
ctgatcctgtgcaagctgaacgtgccgcctgagggcgatctgaagcaaatgatgaccggc
aagcccagcaagctggtcagccagttccgactgacctatggaatggtgctgagcctgctg
cgagtggaaagcctgaccgttgaacagatgatatcgaagagttttggcgaggccgaccat
cagaaaaacgcacccgaattggacgaggaactgcaaaggactgaacagaagctgcaagat
ttacacaagcagtcgctgagcagctacttgcagccgctgacaaagttctttgacgccgcc
aatctttatctgaagaagcgcatggaactgatgccgaagctggtggcggttgccaaagtg
cagaaagtgctcctgcccggtgctttgatagtgatcactaagaaagggcacatcaacaag
ctcgccttgattatatccaagaaactctcccagtatatggcgttggtgctcactgatcca
agcgaggcggactcaggaggcaatacgaatgacgacagttggtaccacatgctggctcta
gctgaagacacgctgttcttgccctcaagcaaaccgagccacacagtcctcaaattaaat
gcagaggatattttcgaaatatcctcaaaaagcctgaagctggacaccaagctggtggag
tccgattgggagaagcggcaaatggagcgcttcaagtccaacccaccaggtgaaacgtgc
atgcaggctgtgcaagagttgcaaaagctcaccctgctggccaatgagagcaaaaccagc
ttggcgctcgtgcatttcgtccgcgatttgaacgtgaacggacaggatttgtactttgat
ctagtggaaatgtacgaggcgaaggacaagcttatcgaccacctgcccagcaccagaatc
ccgaacttccaagagcagtttggcgcagtcttcgaaaggaagtttttggaggagaaaaag
aaggacttggagtatcaactgtcgacgcccagtctggccttgtatccggactacaagaac
aggatcgagctgttgaagactttggggtatgtggatggggaaaacaccgttaaactaaaa
ggcagcgttgcctgcgaaatgggcatgaatgagctattgataaccgaactggtggttgat
gatattttcgttgatctcaaaccgcccgaagtggctgctctcctctcttgcttggtcttc
caagtgaagctcagaggagaccccagcgagtacgagccgcaactgactcccaaactcaaa
aaaggcattagactgatcaaatcggtgcatcagaaaatcgccaacatggaattggcgctg
ggcatccagactgaagagttccagaacgagctgaacgtgggtttggtgcatgtggtctac
cgttgggccaatgctgagccattcgcggaaataatgaaactaacggagatccaagaggga
ataatagtgcgatgcatccagcagctaaacgagacgattatggacgtgagagatgccgca
aaaatcatcggaaatcccgcactcagaacgaagatggaggaggcttcggcagccatcaag
cgcgacattgttttcgccgaaagcctctacacccaagatgaaaagttgtag
DBGET
integrated database retrieval system
