Dendroctonus ponderosae (mountain pine beetle): 109544578
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Entry
109544578 CDS
T04899
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109544578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpa03041
]
109544578
Enzymes [BR:
dpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109544578
Spliceosome [BR:
dpa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109544578
Complex B
109544578
Complex C
U2 SnRNP specific factors
109544578
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
DUF6232
Motif
Other DBs
NCBI-GeneID:
109544578
NCBI-ProteinID:
XP_019770418
UniProt:
A0AAR5QB20
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MSGFNYSSFNSKKMNAVPPPANLGGSTGPKKLNAVPPPTNIAPGVRNSAVPVPGSGLSKQ
GYSTMTSISQNALTASWGTGSRKRAVTEDEYFDVDEEEQVPDLAYIPAPDSPTRLEMDKK
QGQEEEEDDPLDAFMAGIEAQVEKETKKEVVPTQQPPQQQPVRNDLEEEDNEESYYRYME
ENPNAGLLPVEEDGIEIEYDEDGNPIPPDKKRIIDPLPPIDHSQFEYKPFQKNFYIEHPE
IKMMSNEKVLELRGTYDLTVKGTDVPKPVASFAHFGFDDKLLKTIIKAEYSSPTPIQAQA
VPAAMMGRDVLGIAQTGSGKTAAFLWPLLKHVSVQKPVDEGEGPIALILAPTRELALQIY
TEAKKFAKIYDLRVICAYGGGSKWEQSKALKEGAEIVVATPGRIIDHVKIGATNLQRVTF
LVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLFSATFKKKIERLAKDALSDPIRISQGI
AGQANEDVTQDVLLLPNQDAKRDWLFRKLVEMLSAGSVLIFVTKKVDAEKVAKDLLLKEY
DCLLLHGDMEQAERNKVITAFKKQEVPLLVATDVAARGLDIPHVRTVVNYDIARDIDTHT
HRIGRTGRAGTQGTAYTLLTSRDKEFAGHIVRNLEAAKQEVPHEILDLALQSAWFKKQRF
KKQDQHSSNVGGIGLGFKDTSAGSMRGFVASSSGNLSTSAPASTKGPATDRLSAMKEAFK
AQYVNQFTASAENTPVAQPRKKKSRWE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcttcaactattcgagctttaatagcaagaaaatgaacgctgtgccccctcct
gctaatttagggggtagtacaggcccaaaaaaactgaatgctgtaccgccgccaaccaac
atcgctcctggggttagaaatagtgccgttcctgttcctggctctggtttgagcaagcag
ggctactccacaatgacttcaatcagtcaaaacgctctaacggcttcgtggggcactgga
agcagaaaacgagctgtaacagaggacgaatatttcgatgtcgatgaggaggagcaagtg
ccagatctagcatatattccagccccagacagcccaacaagattagagatggataaaaag
caaggacaggaagaggaagaggatgatccattggatgctttcatggctggtatagaagca
caggttgaaaaagaaacgaaaaaagaggttgttccaacgcagcaacctcctcaacaacaa
cctgtgaggaatgatctagaagaagaagacaacgaagaatcttattaccgatatatggag
gagaacccgaacgcaggacttttaccagttgaagaagacggcattgaaatagaatatgat
gaggatgggaatccaataccgccagataagaagagaattatagatcctctaccgccgatt
gatcactcccaattcgagtacaaaccctttcagaagaacttttatattgagcatcctgaa
attaaaatgatgtcaaatgagaaggtgctggagcttcgaggcacatacgaccttacagta
aaaggcactgatgtaccaaaacccgtcgcttcttttgctcatttcggctttgacgacaaa
ttgctgaaaactatcattaaggctgaatattcatcgccgactcccattcaagcccaagca
gttccagcagcaatgatgggcagggatgtcttgggaatcgcacaaactggcagtggtaaa
acagcagcgtttttatggccgcttttgaagcatgtgtccgttcaaaagccagtcgacgaa
ggtgaagggcccatagcgctcatattggctccaacgagagaattagcgctgcaaatatat
acagaagccaaaaaatttgcgaaaatttacgacttgcgagttatttgtgcctatggaggt
ggttctaaatgggaacaaagtaaagctttaaaggaaggtgcagagatcgtagttgctact
cccggacgaataattgaccatgtaaagatcggagctacgaatctgcaaagagtgaccttt
ttagtacttgatgaagcagatcgaatgttcgaattggggttcgaaccacaagttcggtct
gtatgtaaccacgtccgcccagacagacaaactttattgttttcggccactttcaaaaag
aaaatcgaaagattagccaaagatgccttatctgacccgattagaatatcgcaaggtatc
gctggacaagcgaatgaagatgtaactcaggacgtgctgctcctacctaaccaggacgca
aagcgcgattggctgtttaggaaactagtggaaatgttatctgctgggtcagttttgatt
tttgttacgaaaaaagtcgatgctgaaaaggtggcaaaggatttgcttctcaaggaatac
gattgtttgctactgcatggtgacatggaacaagctgaaaggaacaaagttatcaccgct
ttcaagaagcaagaagtacctttattggttgccactgatgttgcggcaagaggtttggat
attcctcatgttcgcaccgtcgttaattatgacatagctcgagatatcgatactcatacg
cacagaatcggaagaacaggacgagcaggcactcagggcacagcatacacgttgcttaca
agtcgcgacaaggaattcgcgggtcatattgtgaggaacctggaggctgctaagcaagaa
gttccccacgagatattagatttagcactacaaagcgcgtggtttaaaaaacaaaggttt
aagaaacaagatcagcattcgtcaaatgtaggaggaattggattaggttttaaagacact
tctgcgggttctatgagaggttttgtcgccagctcgtcgggaaatttatctaccagcgct
cctgcttccactaaaggaccggcgaccgaccgactttccgctatgaaggaagctttcaaa
gcacaatacgttaaccaattcacagccagcgccgaaaatacgccagtcgctcaaccaaga
aaaaagaaaagccgatgggaataa
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