Dendroctonus ponderosae (mountain pine beetle): 109545488
Help
Entry
109545488 CDS
T04899
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpa03016
]
109545488
Enzymes [BR:
dpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109545488
Transfer RNA biogenesis [BR:
dpa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109545488
Prokaryotic type
tRNA splicing ligases
109545488
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
109545488
NCBI-ProteinID:
XP_019771787
UniProt:
A0AAR5QF27
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYNEELAYLEKINNHCWRIKKGFQPNMRVEGVFYVNQTLEKLMLEELRNSCRPGMV
GGFLPGVKQIANVAALPGIVGKSIGLPDIHSGYGFAIGNMAAFDMNDPESIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIN
SVEGQDYLKSMAAAANFAWVNRSSMTFLTRQAFAKQFDTTPDDLDMHVIYDVSHNIAKVE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
LETFGSTCHGAGRALSRAKSRRNIDYTDVLKRMEDMNIAIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtcagacaatataatgaagaattggcctacttggaaaaaatcaacaatcactgc
tggcgcatcaaaaaaggctttcagccaaacatgagagtcgagggtgtgttttacgtgaac
caaacgctcgaaaagttgatgttggaggagcttcgcaactcgtgcaggcctggaatggtt
gggggattcttgcccggtgtcaaacagattgccaatgtggcagccctgccgggcattgtg
ggcaagtcgatagggcttccagacattcactctggttatggatttgccattggaaacatg
gcagcgtttgatatgaacgacccagagtctatagtgagcccaggtggggtcggttttgat
atcaactgtggagtcagattactgagaaccaacttgtttgaaaaagacgttcagcccgta
aaagaacaattagcgcaaagcctatttgaccatatcccagtgggagttggatctaaaggc
attattccaatgaatgcaaaagatctggaagaagctcttgaaatggggatggattggtca
ttgagggaaggttacatctgggcggaagataaggaacactgcgaagaatatggtagaatg
ctgaacgcagatccatcgaaagtgagcatgagagccaaaaaaagagggctaccgcagctg
ggaactttaggggccggaaaccactatgcagaaatccaagttgttgatgagatctacgat
aaatgggcggcctgcaagatgggcatcgaagaaaaaggccaagtatgcgtgatgattcat
tcaggaagcagaggatttgggcatcaagtagctactgatgctctcgttcaaatggaaaaa
gccatgaaaagagacaaaatagaaacgaatgaccgacaattagcgtgtgctcggattaat
tcagtagaagggcaggattatttaaaatccatggcggcggcggccaacttcgcctgggtg
aaccgaagttcgatgactttcttgactcgccaggcgtttgccaaacagtttgatacgaca
cccgatgacctggacatgcacgttatctacgatgtttcccataatattgccaaagttgaa
gagcatattgtggatgggaagcaaaagacactcctggtgcatagaaagggatcaaccaga
gcctttccacctcatcaccctctgattccagtagattatcagctaacaggccaacctgtt
ttaattggtggaaccatgggaacttgcagttatgttcttacgggcacagagcaaggaatg
ttggaaacgttcggttctacttgtcatggggctggtcgagctctttcccgagccaaatca
cgccggaacattgactataccgacgttctaaaacgaatggaagatatgaatattgccatc
agagtggcgtctcccaaactggtaatggaagaagctcccgagtcatataagaacgtgact
gatgtggtcaacacttgtcatgccgcaggaatctcgaaaaaagccattaaactcagaccc
atcgccgttattaaaggataa
DBGET
integrated database retrieval system
