Dendroctonus ponderosae (mountain pine beetle): 125504589
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Entry
125504589 CDS
T04899
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03020
RNA polymerase
dpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125504589
09124 Replication and repair
03420 Nucleotide excision repair
125504589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpa03021
]
125504589
03400 DNA repair and recombination proteins [BR:
dpa03400
]
125504589
Enzymes [BR:
dpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125504589
Transcription machinery [BR:
dpa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125504589
DNA repair and recombination proteins [BR:
dpa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125504589
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
125504589
NCBI-ProteinID:
XP_048522765
UniProt:
A0AAR5QEJ7
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MSMYEQDYDQFDDEETEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRI
VEDSPAIELQAEAQHTTGEIEVPPRFLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNL
TYSAPLYVDITKTIIKEGEDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECP
LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVN
MMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMM
EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE
TKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMY
AQKFIDRGKDFNLDLAIKTKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAST
LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEIAPSAIANATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIV
SEVSMIRDIRDREIRIYTDAGRICRPLLIVENSQLLLKKKHIDNLKEREYNNYGWQMLVA
SGVVEYIDTLEEETVMIAITPDDLRQEKDYAYCSTYTHCEIHTAMILGVCASIIPFPDHN
QSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGIN
SIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPTRQTC
QGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTMTLPENDDELEGVTKRWTKRDASTFLR
NSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT
CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQE
YGYQLRGNEVMFNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEG
RARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANMRNNTFEC
KGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgtacgaacaggattatgatcaatttgacgatgaggagactgaagaaatcagc
tccgaactctggcaagaagcgtgctggattgtcatcaacgcatacttcgatgaaaagggc
ctggtgcggcagcagttggacagttttgatgaattcatccaaatgtctgtgcagaggatt
gttgaagattcgcccgccatcgagctgcaggccgaggctcagcacacaactggagaaatc
gaagtgccgcccagatttttactgaaattcgaacagatttatttgtccaaacccacgcat
tgggagaaagatggtgccccgtcgccgatgatgcctaatgaagctcggctgagaaacctg
acttattctgctccgctgtatgtcgatatcactaagactatcatcaaggagggcgaagac
ccggtcgagacccagcatcaaaaaacctttatcggaaaaatcccaattatgttgcgctca
acatattgcttacttagcggactcactgatcgagatttgactgagttgaatgagtgcccg
ttggatccagggggttatttcattattaacggctctgagaaagtgttaattgctcaagag
aaaatggccacgaacacggtatatgtattttccatgaaagatggaaagtatgcctacaag
tctgaaataagatcttgcttagagcacagttcccgccctacatcgacgctctgggtcaat
atgatggccagaggcgggcaggcgattaaaaaagcagctatcggccaaagaatcatcgcc
atcctgccatacatcaagcaggaaatccctataatgatagttttccgcgctttgggcttt
gtggccgaccgcgatattttggagcacatcatctacgactttgaggacccggaaatgatg
gaaatggtcaaaccctctctggacgaggccttcgtaatccaagagcaaaatgttgcgctg
aattttattggagccagaggcgccagaccgggagtaacaaaggaacggcgtattaagtat
gcaagggaaattctgcaaaaggaaatgttacctcatgtgggtgtttctgatttttgcgaa
actaaaaaggcatatttcttggggtatatggtgcatcgacttctgttagcagcacttgga
aggcgagaattagatgaccgggatcactatggaaataaacgactggatttggcaggtcca
ctgctggccttcctgttcagaggactgttcaagaatttaatgaaggaagtccgaatgtat
gcacagaagttcattgatagaggaaaggacttcaatttggatctggccattaaaaccaaa
ttgatcaccgatgggttgaggtattcactggccactggaaactggggcgaccagaagaag
gcgcatcaggctcgggcaggcgtatctcaggtattgaatcgcctgacgtttgcctcaaca
ctgtctcacttaaggcgagtaaactcgcccattggtagggatggcaagctagctaaaccg
cgtcagctccacaacactctttggggcatgatttgcccagctgaaacccctgagggcgcc
gctgtaggtcttgtaaaaaatctggctctcatggcctacatatctgtcggatctcaaccg
tcccccattctggagtttttggaagaatggtccatggagaacttggaagaaattgcgccg
tcggctatagcaaatgccacgaagatattcgtcaacggatgttgggtgggtattcatcgc
gatcccgaacaacttatggcgacgttgaggaaactcaggcgccaaatggacattattgtc
tccgaagtgtcgatgatccgagatattcgggatagggaaattcgaatttatacagacgcc
ggtcgtatttgtagaccactgctgattgtcgaaaatagtcagctgctgcttaagaagaag
cacatagacaatttgaaggagcgggagtacaataactatggttggcagatgttagtcgcc
tcaggtgtagtggaatacatagacactctggaggaagaaacggttatgattgccatcacc
ccagacgatttgcggcaggaaaaggactacgcctactgcagcacatacacgcattgtgag
atccataccgctatgattttaggggtgtgcgcgtccattattcccttcccggatcacaac
caaagtccgaggaacacctaccaaagtgctatgggcaaacaggctatgggcgtttatatc
acaaacttccacgtgcggatggacacattggctcacgttctttattaccctcacaagccc
ctggttaccactagatccatggaatacctccgatttagagagttgccagctggaatcaac
agcatagtggccattgcctgctacacagggtataaccaggaggattccgttattttaaat
gcttctgctgtggagcgcgggttctttagatcagtgttttaccgttcgtataaagacgcc
gaatccaagcgcattggcgatcaggaagagcaattcgagaaacccactaggcaaacgtgc
caaggaatgcgaaacgctctttacgacaaattggatgatgacggcatcatatcgccagga
attcgagtgtctggagatgatgttgttataggaaaaactatgactttgcctgaaaatgac
gacgaactggaaggtgtgactaaaagatggacaaagcgggatgcttccaccttcctacga
aacagtgagacgggagtcgtggaccaagtgatgttaacgttaaattctgagggatacaag
ttctgcaaaatcagggtgcgctcggttagaatcccgcaaatcggggacaaatttgcctcc
cggcacggacagaaaggaacctgcggcattcagtatcggcaggaggacatgcctttcaca
tgcgaaggaatcacgccggacatcatcatcaacccccatgccatcccgtcgcgtatgaca
attggccatttgatcgagtgtcttcaagggaaggtctcctcaaacaagggggaaattggt
gacgccaccccgtttaatgacgcggtaaacgtgcagaaaatctccactcttttgcaagag
tatggataccaactcagaggcaacgaggtgatgtttaacgggcacacgggaaggaagatc
aatgcccaaattttcttgggccccacatactaccaacgtctgaagcacatggtggacgac
aaaattcactccagagccagaggcccagtgcagattctcgtgcgacaacccatggagggt
agggcgagagacggaggcctgcgtttcggagaaatggaacgagattgccaaatatcccat
ggtgccgctcagttcctgcgggaacgattattcgaggtgtccgatccctatcgggtgcac
atttgcaacttctgcggcctgatcgctattgccaatatgcggaacaacacattcgagtgc
aagggctgcaagaataagacccaaatctcgcaagttcgtttaccttatgcggccaagctg
ctgttccaggagctgatgtctatgaatattgctcctaggcttatggtgctttag
DBGET
integrated database retrieval system
