Dendroctonus ponderosae (mountain pine beetle): 125505662
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Entry
125505662 CDS
T04899
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03022
Basal transcription factors
dpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125505662
09124 Replication and repair
03420 Nucleotide excision repair
125505662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpa03021
]
125505662
03036 Chromosome and associated proteins [BR:
dpa03036
]
125505662
03400 DNA repair and recombination proteins [BR:
dpa03400
]
125505662
Enzymes [BR:
dpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125505662
Transcription machinery [BR:
dpa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125505662
Chromosome and associated proteins [BR:
dpa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125505662
DNA repair and recombination proteins [BR:
dpa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125505662
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
nSTAND3
AAA_11
UvrD-helicase
Exog_C
Motif
Other DBs
NCBI-GeneID:
125505662
NCBI-ProteinID:
XP_048525864
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MRLSVDGLIVYFPYEYIYPEQYAYMCELKKALDAKGHCLLEMPSGTGKTTTLLSLIVAYM
IEHPHDVRKLIYCSRTVPEIEKVMEELKKLLDYYDKLDGQYPSLVGLVLSSRKNMCIHPQ
VSTEREGKIVDGKCHSLTASYIRERHNIDDTTAVCQYYEGFSLDGKESNLPYGVYNLDDI
KQYGRDRNWCPYFLARFAIMHANIVVYSYHYLLDPKIADVVSKELARESVIIFDEAHNID
NVCIDSMSVKIHKRTIERATANIGTLEKHVSEMRDEDHRKLKEEYQRLVEGLRDASVARD
TDLILSNPVLPDEILQEAVPGNIRNAEHFICFLKRFVEYLKTRLRVQHVVQESPVGFLKD
VQQKVCIERKPLRFCAERLASLLRTLEITDMTEFGPVVLITHLATLVSTYTKGFTIIVEP
FDDKTPTVSNPILHFSCLDSSIAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMSS
FTMTLARPCLLPMIVAKGNDQVAISSKFETREDNAVIRNYGQLLVEVAANVPDGIVCFFT
SYLYLESVVAAWYDQGVIDSLQRYKLLFIETQDSAETSFALMYYIKACESGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLDYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMIFADKRFSRADKRSKLPKWIQEHLKDSLCNLSTEEAIQIAKRW
LRQMAQPFTREDQLGVSLLTLEQLEAMEEKKLGDQAQQKSDS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgaggttaagcgtagacggccttattgtgtattttccatatgaatatatttatccagaa
cagtatgcctacatgtgcgaacttaaaaaagcccttgatgccaagggccactgtttattg
gaaatgccttcgggaacgggaaaaaccaccactttactgtcgctcattgtagcgtacatg
attgagcatcctcatgatgtacgcaaattaatctactgttctcgtactgttcctgaaatc
gaaaaagtcatggaggaattgaagaagctcttagattactatgataagttagatggacag
tatcccagtctggttgggttagtgctcagttccagaaagaacatgtgcatccatccacaa
gtaagcacggaacgagaaggtaaaattgtggatggaaagtgccacagtctcactgccagt
tacatcagggaaaggcacaatattgatgataccaccgcagtttgccaatattacgagggc
ttttcgcttgatggcaaagagagtaatctgccttacggtgtttataacttagacgacatc
aaacagtatggaagggacaggaattggtgtccgtactttttggccagatttgctattatg
cacgccaatatagtagtctacagttaccattatcttctggacccaaaaatcgcagatgtg
gtctcgaaagagcttgcaagagaatccgtcattatatttgacgaagcgcacaacattgat
aacgtatgcatcgattctatgagtgtaaaaatacacaagcgaaccatagaaagagcaaca
gccaatataggaactttggagaaacatgtgtctgaaatgcgagatgaagatcacagaaaa
ctgaaagaggaatatcagcggcttgtagaaggattacgagatgctagcgtggcaagagac
accgacttaatactttcaaatccagttttgcccgatgaaattttgcaggaagccgtgccg
ggaaatattcgaaatgccgaacactttatttgtttcctaaagcggtttgtcgaatatttg
aaaacaagattaagagtgcagcatgtggtacaagaatctccggtgggtttcttgaaagac
gtccagcaaaaagtgtgcattgaaaggaagccgttaaggttttgtgcggagcgtctagcg
tcgcttttacgcactttagaaattacagatatgaccgaattcggacctgttgtccttatt
acgcatctggccaccttagtttcaacctataccaaaggattcacaataattgttgagccc
tttgatgacaaaactcccactgtatcaaatcccattttacatttcagctgtttagactcc
tcaatagcaattaagcctgtcttcgaccggttccaaacggtggtaataacgtctggaacg
ttgtcacctttggacatgtatccgaaaatactaaattttcagcctgtgataatgtcgtcc
tttacgatgactctggcgaggccgtgcttattgccgatgatagttgcaaaaggtaacgac
caagttgcgatatcatcaaaattcgaaacccgcgaagataacgcagttataagaaattat
ggacagttgttagtagaggttgcggcaaatgtccctgatggtatagtgtgtttcttcaca
tcctatctgtatttggagtcggtggtagctgcttggtatgaccagggagttatcgacagt
ctgcaaaggtacaagttgctgttcatagaaacacaggactctgcagaaaccagcttcgcg
ctaatgtattatattaaggcttgtgaatccggacgaggtgctgttttgctatcggtagca
cggggcaaggtatctgaaggagtggacttcgatcatcatctgggaagggctgttttaatg
tttggtattccatatgtctacactcagtccagaatattgaaggcccgattagattatctc
agggatcagtttcagattagggagaacgattttctgactttcgacgcgatgagacatgcg
gcccaatgcgtaggaagagcaattagagggaaaaccgattacggtattatgattttcgcc
gacaaacgattctctcgggcagataaaagatcgaagttgcccaaatggattcaagagcat
ttgaaggatagcctttgcaacctgtctaccgaagaagcgatacagattgccaagaggtgg
ttaaggcagatggctcaaccattcaccagagaggaccaactaggagtgtctttgttaacg
ctagaacaacttgaggcgatggaagagaaaaaattgggggatcaagcacagcagaagtcg
gattcatga
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integrated database retrieval system
