KEGG   Candidatus Babela massiliensis: BABL1_gene_480
Entry
BABL1_gene_480    CDS       T02948                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
dpb  Candidatus Babela massiliensis
Pathway
dpb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dpb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BABL1_gene_480 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpb03021]
    BABL1_gene_480 (rpoC)
   03400 DNA repair and recombination proteins [BR:dpb03400]
    BABL1_gene_480 (rpoC)
Enzymes [BR:dpb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BABL1_gene_480 (rpoC)
Transcription machinery [BR:dpb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BABL1_gene_480 (rpoC)
DNA repair and recombination proteins [BR:dpb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BABL1_gene_480 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 OB_RNB
Other DBs
NCBI-ProteinID: CDK30539
UniProt: V6DG60
LinkDB
Position
complement(477501..481565)
AA seq 1354 aa
MSNRLLERFREYINTTQFNSIKIGLASPEKIRSLSYGEVKKIETINYRTLKPERDGLFCA
RIFGPVKDWECNCGKYKRMKHRGITCEKCGVEVIQSRVRRERMGHIELVAPVSHIWYLKG
IPSYLSLIMDMSIKDLERVIYFDAYLVIKQGRSPYPVKTLLSSVDYENYLDIRPDDHDFV
AETGAKAIKDALSDMDLHDVVKALQIEYEKTTSVAVRHKMMRRIKVFSNLIQGNLRPEWM
ILSVLPVLPPDLRPLVPLEGGRFASSDLNELYRRVINRNIRLQRLIEIEAPSVIIKNEKR
MLQESVDALIDNGRRGQPVRGPNRRQLKSLSEMLRGKQGRFRQNLLGKRVDYSGRSVIVV
DPELKIDQCGLPKIMALELFKSHVYAGLLEREYAPNLRVAKRMVEESDPEVWDVLEEIVK
GYPVLLNRAPTLHRLGIQAFYPILVDGKAIKVHPLVCSAFNADFDGDQMAVHIPLSKNAK
EECKNLILSSKSVLSAANGRPVSVPSQDMVLGLYYITKVRFNSKGENIVFSNILEIISAY
QLGQVDLHARIKLRLNSKDIVETTVGRVLLYDALPEGSELNWVNKVMTKGDLGKLLERVY
YRFGPEETVKCLDKIKKLGFYNSTMAGVSFAIHNLIVPDNKDTIVSKAEKEVQKVEQLYK
DGVITNGERYNKVISIWNQANIDVASQMTKEMVAQDKEAYLNEDKQFKPFNSIYMMLESG
AKGTKDQVKQLSGMRGLMAKPSGEIMETPVKNNFKHGLSVFEYFISTHGARKGQADTALK
TANSGYLTRRLVDVAQDVVVSMQDCKTLGYVELEDLKEAGDVLYSLSQRSYGRVVAQDIK
DPITGEIILKQGETVGRDDIAKINDSAVSKILVRSPLVCQAKRGICALCYGYDLSKAEIA
DVGATVGIIAAQSIGEPGTQLTMRTFHVGGTANVSEQSYYVAKYDGTVKLRNLRAIENKD
GQTIVLSRKAKLVILADDGRELQRNELEYGSILLVQDGQKVKVGTRLAEWDVNSKVILTE
RTGRIKFIDLIENVTIQERFDEATNKSSKFILEHKGDRYQPAIAIESDQGEELALYYLPV
NAYLMVNNRQKVNVGDILVKTPREASRTKDITGGLPKIAELFEARMPKEPAILADIDGEI
AFGGLQSGRRKISIINADESHDYFIPRSKQLNVANGDKVNAGDKLTTGTPVLHDILKILG
SEYLQKYLLDQIQEIYRLQGIDINDRHIELIVRQMLRKVRVVDPGDTDFLIGDRVDKIHF
KTVNEALITEGKKPAIGKPILMGITLSSLGTESFISSASFQETTRILAEAAISGQVDHLY
GLKENVIIGKLIPAGTGIKSFRKKYLEKDNQLQY
NT seq 4065 nt   +upstreamnt  +downstreamnt
gtgagtaatcgcttacttgaacgttttagagaatatattaatactacacaatttaattct
attaaaataggtcttgcttctcctgaaaagatacgttcactttcatatggtgaagttaag
aaaatagaaactataaattatcgtacattaaagcctgaaagagacgggcttttctgtgca
agaatatttggacctgtaaaagactgggaatgtaattgcggtaaatataaacgcatgaag
catagaggtattacttgtgaaaaatgtggtgttgaagtaattcaatcacgagtcagaaga
gaacgtatgggacatattgaattagttgctcctgtttctcatatatggtatttaaaaggt
attcctagttatttaagtttaattatggatatgtctattaaggaccttgagcgtgttatt
tactttgatgcttatttagtcattaagcaaggacgatctccttatccagttaagacttta
ctaagttcagtagactatgaaaattatttagatatacgtcctgatgatcatgattttgta
gcagagactggagctaaagctattaaagacgctttaagcgatatggatcttcatgatgta
gttaaagctcttcaaatagaatatgaaaaaacaacttctgtagcagtaagacataaaatg
atgcgaagaattaaagttttttctaatctaattcaagggaatttaagaccagaatggatg
atcttaagtgtgctgccagttctacctcctgatttaagaccattagtacctttagaaggc
ggtagatttgcaagttctgatttaaatgaactatatagacgtgtaatcaatagaaatatt
agattacaaagattaattgaaattgaagcgccttcagtaattattaaaaacgaaaagcgt
atgcttcaagagtcagttgatgctcttatagataatggacgtcgtggtcaacctgtaagg
ggacctaatcgccgacaattaaaatctcttagcgagatgttaagaggtaaacaaggtaga
tttagacaaaatttacttggtaagcgtgttgattattctggtagatccgtaattgtagtt
gatccagaattaaaaatagatcaatgtggattgcctaagattatggctttggaactattt
aaatctcatgtgtatgctggattacttgagcgtgaatatgctcctaatttaagagtagcc
aaacgtatggtggaagaatcagatccagaggtgtgggacgttcttgaagaaatagtaaaa
ggatatccagttcttcttaaccgtgcaccaacactgcatagattaggtatacaagctttt
tatcctatcttggttgatggtaaggctataaaagttcatccgttagtgtgtagtgcattt
aatgctgactttgatggagaccagatggcagtacatataccgttgagtaaaaatgcaaaa
gaagaatgtaaaaacttaatcttatcttcaaaaagtgttctttctgctgcaaacggtaga
cctgtttctgttccatctcaagatatggttttagggttatattatattactaaagttaga
tttaatagcaagggcgaaaatatagtattttcaaatatcttagagattatttctgcttat
caattaggtcaagtggatcttcatgctcgtattaaattaagattaaattctaaagatata
gttgaaactaccgttggaagagtattgctatatgatgctttacctgaaggatctgagtta
aattgggttaataaggttatgacaaaaggtgatttaggtaaattacttgaaagagtatat
tatcgctttggtccagaagaaactgttaaatgcttagataaaatcaaaaaacttggtttt
tataattccactatggcgggtgtatcttttgctattcataatttaatagttcctgataac
aaagatactattgtttcaaaggctgaaaaagaagttcaaaaagttgaacaactttataaa
gatggtgttattacaaatggtgaacgctataataaagttataagtatctggaaccaggca
aatatagatgtagctagccaaatgaccaaagagatggtagcccaagataaagaagcttat
ttaaacgaagataaacagttcaagccatttaactctatatatatgatgttagagtcaggt
gctaaaggtactaaagatcaagttaagcagctttcaggtatgagaggtttgatggctaag
ccgtcaggcgagattatggaaactcctgtaaaaaataactttaagcatggattaagtgtt
tttgagtactttatttcaactcatggtgctcgtaaaggtcaagcagatactgctctaaaa
acagcaaactcaggttacttgactagaagattagttgacgttgctcaagatgtggttgtt
agcatgcaggattgtaaaactttagggtacgttgaattagaagaccttaaagaagcggga
gatgttctttattccttgtctcaacgttcatacggaagagttgttgctcaagatattaag
gatccaataactggagagattatcttaaagcaaggtgaaactgtcggtagagatgatata
gcaaaaataaatgactctgccgtatctaagatattagttcgctcgcctttagtctgtcag
gcaaaaagaggtatttgtgcgctatgttatggttatgatttatctaaagctgaaattgct
gatgtaggagctacagttggtataatagctgctcaatcgattggggagccaggtacacag
cttactatgagaactttccacgttggaggtacagcaaacgtttctgaacaatcttattat
gttgctaaatatgatggaacggttaagttacgcaatttaagagcaattgagaataaagat
ggccaaactattgttttaagcagaaaagctaaacttgtaatacttgcagatgatggtaga
gaacttcaacgcaatgagcttgaatatggatctatattattggttcaagatggtcaaaaa
gtcaaagtaggaactagacttgctgagtgggatgttaatagtaaggttatattaacagag
cgtacaggtagaattaaatttatcgatttaattgaaaatgttactattcaagagcgattt
gacgaagcgaccaataaatcaagtaaatttattcttgaacataaaggcgataggtatcag
ccagctatagcgattgaaagtgatcaaggagaagaattagctctttactatttaccggtt
aatgcttatttaatggtaaataatagacaaaaagttaatgttggtgatatactagtaaaa
actcctcgtgaagcttcaagaacaaaagatattacaggtgggttacctaaaattgctgag
ttatttgaagcaagaatgcctaaagagcctgcaattttagctgatattgatggtgaaatt
gcttttggaggcttgcaaagcggacgacgtaagattagcattattaatgccgatgagtct
catgattactttatcccaaggtctaaacagttgaatgtagcaaatggtgataaagttaat
gcaggtgataaattgacaactggaacaccagtactacatgatatattaaaaatattgggg
tctgaatatctacagaaatatcttttagatcaaattcaagagatttataggttgcaaggt
attgatattaatgataggcatatagaacttattgttaggcaaatgcttcgtaaagttcgt
gtggttgatccaggagatactgatttccttatcggtgatcgtgtagataaaatacacttt
aaaactgttaatgaagcactgataacagaaggcaagaaaccagctattggaaaacctatt
ttaatgggtataacattatcttctttaggaactgaaagctttatatcgtctgcttctttc
caagaaactactagaatattagcagaagctgcaatatcaggacaagttgatcatctttat
ggacttaaggaaaatgttattataggaaaattaatacctgcaggaactggaataaaatct
tttagaaaaaaatatttggaaaaagataatcagttgcaatattaa

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