Candidatus Babela massiliensis: BABL1_gene_486
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Entry
BABL1_gene_486 CDS
T02948
Symbol
pcrA
Name
(GenBank) Superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dpb
Candidatus Babela massiliensis
Pathway
dpb03420
Nucleotide excision repair
dpb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BABL1_gene_486 (pcrA)
03430 Mismatch repair
BABL1_gene_486 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpb03400
]
BABL1_gene_486 (pcrA)
Enzymes [BR:
dpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BABL1_gene_486 (pcrA)
DNA repair and recombination proteins [BR:
dpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BABL1_gene_486 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
BABL1_gene_486 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
AAA_11
AAA_30
ResIII
DUF5739
DEAD
Ski2_beta-barrel
DUF2067
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
CDK30533
UniProt:
V6DHX4
LinkDB
All DBs
Position
469562..471805
Genome browser
AA seq
747 aa
AA seq
DB search
MENQKNSFNNFFKDFLNQEQQKAISPKNGVLLVHAGAGSGKTRVITSRIASLIINHSVDP
ESILALTFTNKAAKEMKERVKNFLQENTKLPYVGTFHSYCLRLLKSSKYFSKSNFSFSLI
DEDDQNKIIKGLIQKHNLDKKITAKQVLSFISKIKNETHNPETSSAFLLANNIFQELYHM
YEKEKSISNCLDFDDLLIKSYRLFEENPEFKAEFQQKIRHILVDEYQDTNQIQHLILKTM
CLNKASENGDFAIDSLCAVGDEDQSIYSWRGATVSNMLNFKKDFKNTVSITLEQNYRSVQ
PILDTANSVIQNNKYRNIKNLWSDKQANDRIRVIQCASGYQEGQAISLFLKELTSITNDF
NTSNAILYRSHFQSRAIEEALIRFSIPYKIIGGIQFYDRQEIKDIIAYLRLILNPFDRLA
FLRIINTPTRGLGPKFEEDYLNQWDEQPFLNFKEIAQNFIENNQLTKNKLDQLKSFLEIF
NDLSDQDKASNIITQIISRTNYFSYLDQNFEKEDSQSKKDNIKELINSAIFFEKNNSSFS
VKEFLEEISLLQELINSNNSNNTQVYLMTFHAAKGLEFDNVMISGVEEGILPSSHSTYIH
ESLEEERRLMYVGITRARERLLISYTMHRTIYGQISNQKPSRFINELPDIYIKKDDCSKW
PYDNFKYYFQNWINNKKYNYNFDQSYTIDSVVNKPSTSSWMIKQKVEHKVFGIGTIEKIE
NNALNTYLTIKFNNAIKKIDAKFLKSI
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcaaaaaaattcatttaataatttctttaaagactttttaaatcaagagcaa
caaaaagctatttcacctaaaaacggagtactattagttcatgcaggggctggctctggc
aaaactagagtaataacaagtaggatagcctccttaatcattaatcatagcgttgatcct
gaaagcatattagcattaacatttactaataaagcagctaaagaaatgaaggaaagagta
aaaaactttttacaagaaaatactaaactgccttatgtaggcactttccattcatactgt
ctgagattacttaaaagcagcaaatatttcagtaaatcaaatttttctttctctttaata
gatgaagatgatcaaaataaaattatcaagggattaatacaaaaacataatcttgataaa
aaaataaccgcaaaacaagttttatcttttatttcaaaaataaaaaacgaaactcataat
ccagagacatcatcagcatttttattggcaaacaacatttttcaagaactttatcatatg
tatgaaaaagagaaaagcatatctaattgcttagattttgatgatttacttattaaaagt
taccgtttatttgaagaaaatcctgaatttaaagcagaatttcagcaaaaaataagacat
attttagttgatgaatatcaagatacaaatcaaattcaacatttaatattaaaaacaatg
tgtctaaataaagcatctgaaaatggcgattttgcaattgattctctttgcgcagtaggt
gatgaagatcaatcgatttactcctggcgtggagcaactgtaagtaatatgcttaacttc
aaaaaagatttcaagaatacagtttctataactttagaacaaaactatcgttcagttcaa
cctattttagatacagcaaacagtgttattcaaaataataaatatagaaatataaaaaat
ctatggtctgataaacaagcaaatgatagaataagagttattcaatgtgcctctggatat
caagaaggacaagcaatttcactatttttaaaagaattaactagcataacgaatgatttt
aatacttccaatgcaatattatatcgctctcattttcaatcaagagcaatagaagaagca
cttataagattttctattccttataaaataataggaggaatacagttttatgatcgccaa
gaaattaaagacataatagcatatttaagattaatattaaatccatttgatagattagca
tttttaagaataattaataccccaactagaggtttaggaccaaaatttgaagaggattat
ttaaatcaatgggacgagcaaccctttttaaattttaaagaaatagctcaaaactttatt
gaaaataatcaattgactaaaaataaactagatcagttaaaatcatttctagaaatattt
aatgatttatcagatcaagataaagctagtaatataataacacaaatcataagccgaact
aattactttagctatctagatcaaaattttgaaaaagaagattctcaaagcaagaaagat
aatattaaagagttaattaatagtgctatattctttgaaaaaaataatagtagtttttct
gttaaagaatttttggaagaaatatctttattacaagagcttataaactctaataactca
aataatacacaagtatacttgatgacctttcatgcagcaaaaggtcttgaatttgataat
gtaatgatttctggggtagaagagggaatcctaccaagtagtcattcaacttatatacat
gaatcattagaagaagagagaagacttatgtatgtaggcattacaagagcaagagaacga
ttattaatatcatatactatgcaccgaactatatatggtcaaatatcaaatcaaaagcca
tctagatttataaatgaattacctgatatatatatcaagaaagacgattgctctaaatgg
ccttacgataattttaagtactatttccaaaattggatcaataataaaaaatataattat
aattttgaccaatcttatactatagattctgttgtaaataagcctagcacaagtagttgg
atgataaaacaaaaagtagaacataaagtatttggtataggcactattgaaaaaatagaa
aataatgctcttaacacatatttaacaataaaatttaataatgcaataaaaaaaatagac
gctaaattcttaaaatctatttaa
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