Candidatus Babela massiliensis: BABL1_gene_990
Help
Entry
BABL1_gene_990 CDS
T02948
Symbol
gyrB
Name
(GenBank) Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
dpb
Candidatus Babela massiliensis
Brite
KEGG Orthology (KO) [BR:
dpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dpb03032
]
BABL1_gene_990 (gyrB)
03400 DNA repair and recombination proteins [BR:
dpb03400
]
BABL1_gene_990 (gyrB)
Enzymes [BR:
dpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BABL1_gene_990 (gyrB)
DNA replication proteins [BR:
dpb03032
]
Prokaryotic type
DNA Topoisomerases
BABL1_gene_990 (gyrB)
DNA repair and recombination proteins [BR:
dpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BABL1_gene_990 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
GyrB_hook
Motif
Other DBs
NCBI-ProteinID:
CDK30296
UniProt:
V6DIE1
LinkDB
All DBs
Position
complement(199057..201459)
Genome browser
AA seq
800 aa
AA seq
DB search
MSDNKKEYGAQSIRVIEGLEAVRKRPAMYIGSTGVNGLHHLVYEIVDNSVDEALAGYCDK
IEVILHTDGSCSVEDNGRGIPTGIHPTENISAAEVALTKLHAGGKFDKDVYKYSGGLHGV
GVSVVNALSQSLELIIYQNNKVHVQSYQQGKPLDILKVTQETKKRGTYIRFLPDPEIFRE
TTIFSFDVLSSRFRELAFLNKGLKIFIKDERSGKSHEFYFEGGIISFVEHINSKKTPLFS
NVIYNFKEDEQSYIEIALQYNDSYTEQLFSFVNNINTIEGGTHVAGFKAALTKVCNKRGQ
EFNILKDSESFSSEDVREGLVGVINLKIAEPQFEGQTKAKLGNGEVKGLIESWVGNILDT
FFEENPAVARKILQKAYLAMQSREAARKAREITRRKTVLESVVLPGKLADCSSENPSESE
LFIVEGDSAGGSAKSARDRFTQAILPLKGKILNVEKARFDKILSNEEIRSLISAIGTGIG
ETDFNLSKARYHKIILMTDADVDGSHIRTLLLTFFFRYMKDLIENGYLYIAKPPLYKAKI
GKKEQYLLDEKSFKKFLIDWIKENGDLIINGQKLSILDYNLVFDNLLRYYDQLQDLARTF
KLHYVHLNQIIEFLFKNPLINQELDQNLDNQDNMDVVVNKLRNYFKGYSITLDKKEDNYI
LSFKQLNNDWSVDFDLFNSPEAYKLVEMYNTLDNLNSNWTLKISDRERSISDKGILNLMS
AIVKISKPYMSIQRYKGLGEMNPQQLWETAMDPKARTLIQVKIGDVLEADSWFDTLMGSD
VGGRREFIEEYGIFAKNLDI
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataataagaaagaatatggtgcccagtctattcgtgttatagaaggacttgag
gcagtaagaaagagacctgcgatgtatattggctctacaggagttaatggattacatcat
ttggtttatgaaatagtagataactctgttgatgaggctttggccggatattgtgataag
attgaggtaatattacataccgatggctcatgttctgttgaagataatggtcgtggtatt
cccactggtatacatccaactgagaatatatcagcagctgaggttgctttaactaaatta
catgctggtggtaaatttgacaaagatgtatataagtattctggagggcttcatggtgtt
ggggtctcagttgtaaatgctttatctcaatctcttgaattaattatatatcaaaataat
aaagttcatgttcaatcatatcaacaaggtaaaccccttgatatcttaaaagtgacgcaa
gagactaaaaagcgtggtacttatattagatttttaccagatccagagatatttcgcgaa
acaacaatttttagttttgatgtactatcttcaagatttagagaacttgccttcttaaat
aaaggcttaaagatctttattaaagatgaaagaagtggtaaaagccatgaattttatttt
gaaggtgggattatatcttttgttgagcatataaattctaaaaaaactccactatttagt
aatgttatttataattttaaagaagatgagcaatcttatatagaaattgccttacaatat
aacgatagttatactgaacaactattttcttttgttaataatataaatactatagaggga
ggtactcatgttgctggttttaaagcagcattgactaaagtatgtaataaacgtggtcaa
gagtttaatattctaaaagatagcgaaagcttttcaagtgaagatgtcagagaaggtctt
gttggcgtaataaatttaaagatcgcagaacctcaatttgaaggacagactaaggctaaa
ttaggaaatggtgaagttaaagggcttattgaatcgtgggttggcaatattcttgatact
ttctttgaagaaaatcctgcagttgctcgaaagatattacaaaaagcttatttggctatg
caatcaagggaagctgctcgtaaagcaagagaaataacaagacgtaaaaccgttcttgaa
tctgttgtgcttccaggaaaacttgctgattgttcaagtgaaaatccttctgagagtgaa
cttttcatagttgagggtgattctgcaggtggatcagctaaatctgcaagagatagattt
acgcaagctattttgcctttaaagggtaagattttaaacgttgaaaaagctagatttgat
aagattttatcaaatgaagagattagatctttaatttctgctattgggactggaattggt
gaaacagattttaatttatcaaaagctagatatcataaaattatattgatgaccgatgct
gatgttgatggatctcatataagaactttactattaactttcttctttagatatatgaaa
gatcttatagaaaatggttatctttatatagcaaaaccacctctttataaagcaaagata
ggtaaaaaagagcaatacttacttgatgaaaagtcttttaagaagttcttaatcgattgg
ataaaagaaaacggtgatttaattataaatggtcaaaaattaagcattttagattataat
ttagtttttgataatttattaagatactatgatcaattgcaggaccttgctcgtacattt
aaattgcactatgtacatttgaatcagattatagagtttttatttaaaaatccattaatt
aatcaagaactcgatcaaaatttagataatcaagataatatggatgtagtggttaataag
cttagaaattactttaaaggatattcaattactttagataaaaaagaagataattatata
ttgagttttaaacaacttaataatgattggtcagttgattttgatttatttaattcccct
gaagcttataagctagtagagatgtataatactcttgataatctaaatagtaattggact
ttaaaaataagtgatagagaacgttcaatatctgataaaggtatattaaacttaatgtct
gctattgttaagataagtaaaccttatatgtctattcaacgatataaaggtcttggagaa
atgaatcctcaacaactttgggaaacagcgatggatccaaaagcaagaactctaattcaa
gtaaaaataggagatgttctagaagctgattcctggtttgatactttaatgggtagtgat
gttggtggcagaagagaatttatagaagagtatggtatatttgccaagaacttagatatt
taa
DBGET
integrated database retrieval system
