Dietzia psychralcaliphila: A6048_00710
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Entry
A6048_00710 CDS
T05437
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dpc
Dietzia psychralcaliphila
Brite
KEGG Orthology (KO) [BR:
dpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpc03016
]
A6048_00710
Enzymes [BR:
dpc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
A6048_00710
Transfer RNA biogenesis [BR:
dpc03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
A6048_00710
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AWH94279
UniProt:
A0AAD0JPJ5
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All DBs
Position
169183..169800
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AA seq
205 aa
AA seq
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MGHRMFVAVLPPDEVREELERFLEPRPGLAWTAPSQWHLTLTFCPGVDEWRIDDLTDRLG
AVARKHEPFRIRLAGAGVFPSVERAKVLWAGVEQSPVPPIGHDRRERPLDALAAGARSAA
NAAGCVPDGARFRPHLTLARLSGRDDATAWLRVLDTFASSTWTVSEIALIDSFLGEGPRG
RARHEVVARLPLGESDQRWWAPSPG
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatcggatgttcgtcgcggtcctgccgccggacgaggtccgcgaggaactcgag
cggttcctcgagccgcgcccggggctggcctggaccgccccgtcgcagtggcacctcact
ctgaccttctgcccgggtgtcgacgagtggcggatcgacgacctcaccgacaggctcggc
gcggtcgcccgtaagcacgagccgttccggatccggttggccggggcgggggtgttcccg
tcggtcgagcgggccaaggtgctgtgggcgggagtcgagcagtcgccggtcccgccgatc
gggcacgaccggcgtgagcgtccgctcgacgcgctggccgccggggcccggtcggcggcc
aacgccgccgggtgtgtgcccgacggagcgcggttccgcccccacctcacgctcgcccgg
ctcagcggccgcgacgacgccacggcgtggctgcgggtcctcgacaccttcgccagtagc
acctggacggtgtccgagatcgcgttgatcgactcgttcctgggcgagggcccgcggggg
cgggcccggcacgaggtggtggcccggttaccgctgggggagtcggaccagcgctggtgg
gcgccgtctccggggtga
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