Dietzia psychralcaliphila: A6048_05665
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Entry
A6048_05665 CDS
T05437
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dpc
Dietzia psychralcaliphila
Pathway
dpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6048_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpc03019
]
A6048_05665
03400 DNA repair and recombination proteins [BR:
dpc03400
]
A6048_05665
Enzymes [BR:
dpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A6048_05665
Messenger RNA biogenesis [BR:
dpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6048_05665
DNA repair and recombination proteins [BR:
dpc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A6048_05665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
HEM4
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AWH95050
UniProt:
A0AAD0NMD4
LinkDB
All DBs
Position
complement(1273755..1275938)
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AA seq
727 aa
AA seq
DB search
MGYMSSLPSAVSTTGPDRHALRSRADELLTALAGQGAALREDQWTAIEALVADRRRALVV
QRTGWGKSAVYFIAARLLRELGSGPTVIVSPLLALMRNQVEAAARAGVRAATINSSNMTE
WDDVRASVRAGEVDVLLVSPERLNNPDFRDTVLPALAADAGLVVVDEAHCVSDWGHDFRP
DYRRIRTLLADLPEGVPVLATTATANDRVVRDVAQQLGVGERPVGSGHPGTDAGDPAESD
TLVLRGGLDRESLRLSVVAIDDSERRAAWLVENLESLPGSGIVYSLTVAAAEDMAELLTS
AGHRVSAYTGRTDAAEREELERALLDNEVKALVATSALGMGFDKPDLGFVVHLGAPPSPI
SYYQQIGRAGRAADRAEVVLLPGPEDRAIWNHFASLAFPAEDVVRRVLDALEPDRPQSTQ
ALEPAVDLGRTRLEMVLKVLDVDGAVQRVRGGWISTGRQWHYDAERYAGLAEARKAEQAA
MIEYERTDSCRMEFLRSQLDDPTLDPASDGCGRCDNCTGERRTTAVDASALTRAREALER
PGVVLPPRRQWPTGLARLDVPLKGKITDGPAEGRALARLTDLGLGQKLRGLLAEPDQEAP
DWVVRACVPVLRDWGWDERPTGVAALLTGERPILVGSLARALAQMGRMDHLGELTRDAAL
PPVTAQNSAYRVAQLWGTFTGPATVPDGPVLLVTDLFGTGWTATEAARHLRSTGAPAVLP
LAVATAG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggctacatgtcctctcttcccagcgccgtctccaccaccggacccgatcgccacgct
ctccgctcgcgcgctgacgaactgctgaccgcgctcgccgggcagggtgcggcccttcgc
gaggaccagtggacggcgatcgaagcgctcgtggccgaccgccggcgtgccctggtggtc
cagcgcaccggctggggcaagtcggcggtgtacttcatcgccgcccgcctgctgagggaa
ctcggttcggggcccacggtgatcgtctcgcccctgctggcgctcatgcgaaaccaggtc
gaggcggccgcccgggccggggtgcgggcggccaccatcaactcctccaacatgaccgag
tgggacgacgtgcgcgcctcggtgcgcgccggcgaggtggacgtgctgctggtcagcccg
gagcggctcaacaaccccgacttccgcgacaccgttctgcccgccctggccgcagacgcc
ggactggtggtggtggacgaggcccactgcgtctccgactgggggcacgatttccgaccc
gactaccgccggatccgtacgctcctggccgacctgcccgagggtgtcccggtactggcc
accacggccacggccaatgaccgtgtggtgcgcgacgtggcgcagcagctcggcgtgggc
gagcgaccggttgggtccggtcacccgggcacggatgcgggcgaccccgcggagtccgac
actctcgtgctgcgcggcgggcttgaccgagagtcgctgcggttgtcggtggtggcgatc
gacgactcggagcggcgcgcggcctggttggtggagaacctggagtccctgccgggtagc
gggatcgtctacagcctgaccgtcgcggcagccgaggacatggccgagctactcacctcc
gccgggcaccgcgtgagcgcgtacaccggccggacggacgccgccgagcgcgaggagctc
gagcgcgccctgctcgacaacgaggtcaaggcgctggtcgccacgtccgcgttgggcatg
gggttcgacaagccggacctgggattcgtcgtgcacctgggcgcccctccctcccccatc
tcgtactaccagcagatcggccgcgccggccgcgcggccgaccgggccgaggtggtcctg
ctccccggccccgaggaccgggccatctggaaccacttcgcctccctggccttcccggcc
gaggacgtggtccggagggtcctcgacgcactcgaacccgaccgcccgcagtccacccag
gccctggaacccgcggtggatctgggccggacccgcctggagatggtgctcaaggtcctc
gacgtggacggcgcggtccagcgggtccgtggcggttggatctccaccgggcggcagtgg
cactacgacgcagagcgctacgcgggtctggccgaggcgaggaaggccgagcaggcggcg
atgatcgagtacgagcggaccgactcgtgccgaatggagttcctgcgctcccagctcgac
gaccccaccctcgacccggcctccgacgggtgcgggcgctgcgacaactgcaccggcgaa
cgcaggaccaccgccgtcgacgccagcgcactgacccgggcccgcgaggcgctggagcgt
cccggggtggtcctgcccccacgccggcagtggcccaccgggctcgcgcggctcgacgta
cctctcaagggcaagatcaccgacggccccgccgagggccgggcgctggcgcgcctgacc
gacctcgggctgggccagaagctacgagggttgctcgccgagcccgaccaggaggcgccc
gactgggtggtccgcgcctgcgtcccggttctgcgcgactgggggtgggacgagcgcccc
accggcgtggcggccctgctcaccggcgagcggccgatcctcgtggggagtctggccagg
gcgctcgcccagatgggccgcatggaccacctcggggagctgacccgcgacgccgcgctc
ccaccggtgaccgcccagaactcggcctatcgggtagctcagctgtggggcacgttcacg
ggcccggccaccgttcccgacgggcccgtcctgctggtcaccgatctgttcggaacgggc
tggacagccacggaagccgccaggcacctgcgatccaccggggcccctgccgtcctgccc
ctggcggtggccaccgcgggctga
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