Dietzia psychralcaliphila: A6048_09105
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Entry
A6048_09105 CDS
T05437
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dpc
Dietzia psychralcaliphila
Pathway
dpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6048_09105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpc03019
]
A6048_09105
Messenger RNA biogenesis [BR:
dpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6048_09105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
AWH95635
UniProt:
A0AAD0NMR2
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All DBs
Position
complement(2005279..2007501)
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AA seq
740 aa
AA seq
DB search
MTENPTNSRGRGRPRRAAGRPTGEPAPATAVQFTEPKAVSNAPAASSGDDRPSQDQGKQD
QGKQDQGKQGGGQQGSSQQAGGQQGRGQSKGQQNKGQQDQKQDAPKGGSRGRGRGASSDG
GQNGGGQNSGGQGGGNQSGGQNGGGRGRGGRGRGRGNGTTTSTAEFGGVKTMQGGDMTVR
LPSPPKPRKGAMRLVALGGITEIGRNMMTFEYDSKLLLVDCGVLFPSSTEPGVDLILPDF
GHIEDRLDQVEALVLTHAHEDHIGAIPFLLKLRPNIPVVGSRFTLALVAAKCREHRIKPV
FQQVDESSVSSFGPFEVRYFDVNHSIPECLGVVVRAGGNSVMMSGDIKLDQLPTDKRPTD
LAKMARFGDEGIDLLLLDSTNATTPGVSRSESEVGPALQRLISDARRLVVVACFASNVYR
VQSVIAAAEACGRKVALTGRSMIRNMEIALELGLLTDPKGVLIDMDAAAKLPSEKVLVMT
TGTQGESMAGLSRMARREHRQINLSEGDTVLFSSSIVPGNEEPVFSVQNSLSQMGVNVVT
SRDANIHVSGHGDAGELLFVYNAVRPKNAMPVHGEWRHLRANRALAVATGVPAQNVVLAQ
NGVVVDLVDGKASTVGQIPVGHLYVDGLSTGDVGDTVLADRTALSEDGFIVATVVVDPRT
GRPVSKPQIIAKGFTDEPGALAPVVELVENALWDLAGEGETDPYRLAQAVRRTVGTWVSD
KWRRKPMIVPTVITSVAAED
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaaacccgacgaacagccgcggacgcggccgtccccgccgcgctgccggccgc
cccacgggcgagcccgcacccgcgaccgccgtgcagttcaccgagcccaaggccgtgtcc
aacgcgcccgcggcgagcagtggagacgaccggccgagccaggatcagggcaaacaagat
cagggcaaacaggatcagggcaagcagggcggcggccagcagggcagcagtcagcaggcc
ggcggccagcagggcaggggccagtccaaggggcagcagaacaagggccagcaggaccag
aagcaggacgcaccgaagggcggctcgcgcggccgcgggcgcggagcgtcctccgacggt
ggccagaacggcggcggccagaacagtggcggccagggtggtggcaaccagagtggtggc
cagaacggtggcggccggggccgcggtggccgcggccgcggccgtgggaacgggaccacc
acctccactgccgagttcggcggcgtcaagaccatgcagggcggggacatgaccgtccgg
ctgcccagcccgcccaagccgcgcaagggcgcgatgcgtctggtcgcgctgggcgggatc
acggagatcggccgcaacatgatgaccttcgagtacgactcgaagctgctcctcgtggac
tgtggtgtcttgttcccgagttcgaccgagcccggagtggacctcatcctccccgacttc
ggtcacatcgaggatcgactggaccaggtcgaggcgctcgtgctcacgcacgcccacgag
gaccacatcggtgcgatcccgttcctcctcaagctgcgtccgaacatcccggtcgtgggg
tcccggttcaccctggcgctggtggcggccaagtgccgggagcaccggatcaagccggtc
ttccagcaggtcgacgagtcgagcgtgagttcgttcggcccgttcgaggtccgctacttc
gacgtcaaccactcgatccccgagtgcctgggcgtggtcgtccgcgccggcggcaattcc
gtgatgatgtcgggcgacatcaagctcgaccagcttcccaccgacaagcggcccaccgac
ctggccaagatggcacggttcggcgacgagggtatcgatctgctgctgctggactccacc
aacgccaccaccccgggggtcagtcgctcggagtccgaggtcgggcccgctctgcagcga
ctgatcagcgacgcccgccggctcgtcgtggtggcctgcttcgcctccaacgtctaccgc
gtgcagtccgtcatcgcggccgccgaggcctgtggccggaaggtcgcgctcaccggccgg
tccatgatccgcaacatggagatcgcgctcgaactggggctgctcacggacccgaagggt
gtcctgatcgacatggacgccgcggcgaagctcccctccgagaaggtcctcgtgatgacc
accggcacccagggggagtcgatggccggactgtccaggatggcccgccgtgaacaccgg
cagatcaacctctcggagggcgacaccgtcctgttctcctcgtcgatcgtcccgggcaac
gaggagccggtcttcagcgtgcagaacagcctgtcccagatgggcgtgaacgtggtgacc
agccgcgatgccaacatccacgtctccggacacggggacgcgggcgagctgctcttcgtc
tacaacgcggtccgtccgaagaacgcgatgcccgtccacggtgagtggcggcacctccgg
gcgaaccgggccctggccgtcgcgaccggtgtcccggcgcagaacgtggtgctcgcgcag
aacggtgtcgtggtggacctcgtcgacggaaaggcgtccaccgtcggtcagatcccggtc
ggccacctgtacgtggacggcttgtccacgggcgacgtcggcgacaccgtactggcggac
cgcaccgcgctgagtgaggacggtttcatcgtcgccacggtggtggtggacccccgcacc
ggtcgaccggtgagcaagccccagatcatcgccaagggtttcaccgacgagccgggtgcg
ttggcgccggtggtcgagttggtcgagaacgcactgtgggacctggcaggggagggtgag
accgatccctaccggctcgctcaggcggtccgccggaccgtcggtacgtgggtgtccgac
aagtggcgtcgtaagccgatgatcgtgcccaccgtcatcacctccgtggcagcggaggac
tga
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