Deinococcus peraridilitoris: Deipe_0903
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Entry
Deipe_0903 CDS
T02381
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpd
Deinococcus peraridilitoris
Brite
KEGG Orthology (KO) [BR:
dpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpd03016
]
Deipe_0903
Enzymes [BR:
dpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Deipe_0903
Transfer RNA biogenesis [BR:
dpd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Deipe_0903
Prokaryotic type
tRNA splicing ligases
Deipe_0903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFZ66472
UniProt:
K9ZZV7
LinkDB
All DBs
Position
complement(922527..923915)
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AA seq
462 aa
AA seq
DB search
MNGNDITALGFTGKAVGLALQAARSRAGAGVPDHDITTELAHVQHHPETFTDDPDYAELA
RELLALQARVPDTLRDKPLPYRQWGEDLIEESARAQMDTAMRLPVSVAGALMPDAHFGYG
LPIGGVLATDNAVIPYGVGVDIGCSMRLSVLPIEHLERDEEMRLLRRNTRFGAGGSWERK
VRPDHEVLDEDTWREFPLLRQLRDKAAEQIGTSGSGNHFVEFGTLSIEKSDLGLQPGQYL
ALLSHSGSRGFGAQVAGHYTKVAQNLHPKLDLEARKLAWLDMSREEGQAYWAAMELAGRY
ALANHEVIHERVARALKVTPLVAVSNSHNLAWRQQLPDGREAIVHRKGATPAAQGQLGII
PGSMADPGFVVRGKGNSQALESASHGAGRQLGRKQAERTLDRKAVARLLEERGVTLLGGG
IDEAPQAYKRIEEVLARQADLVDVVAKFTPRVVRMDSGKEDI
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaatgacatcacggcactcggatttacaggcaaggcggtcggcctcgcgctt
caggccgcgcgttcccgcgccggggcaggcgtacctgaccacgacatcaccaccgaactc
gcgcacgttcagcaccacccggagaccttcacggacgacccggactacgccgagctcgcc
cgcgagctgcttgccctgcaggcccgcgtacccgataccttgcgcgacaagcccctgccg
taccgccagtggggcgaggatctgatcgaggaaagtgcgcgcgcccagatggacacggcc
atgcgcctgcccgtcagcgtggcaggggccctcatgcccgacgcgcacttcggctacggc
ttgcccatcggaggtgtgctggccaccgacaacgcggtcattccgtatggcgtcggcgtg
gacatcggctgctccatgcgtctcagcgtgctgcccatcgagcacctggagcgcgacgag
gaaatgcgcctgttgcgccgcaacacccgcttcggagcaggcggatcgtgggagcgcaag
gtgcgtcctgaccatgaggttctcgacgaggacacctggagagagttcccgctgctgcgc
cagttgcgtgacaaagccgccgagcagatcgggacgagcggctcgggtaaccatttcgtc
gagttcggcaccctcagcatcgagaagagtgacctcggcctgcagcccggtcagtacctg
gcgctcctgtcacacagcggctcgcgcggttttggggcgcaggtggccgggcactacacc
aaagttgcccagaatctgcaccccaaactcgacctcgaagcgcgcaagctggcgtggctc
gacatgagccgcgaggaaggacaggcgtattgggccgccatggagctcgccggacgttac
gcgctggcgaaccacgaagtcattcacgaacgcgtcgcgcgggccctcaaggtcacgccg
ctggtggccgtcagcaacagccacaacctggcgtggagacagcagcttcccgatggccgt
gaggcgatcgtgcaccgcaagggggccaccccggccgcgcagggccagttgggcatcatt
cccggcagcatggccgatccaggcttcgtggtgcgtggaaaaggcaattcgcaggcactg
gaaagtgcctcgcacggcgcgggccgtcagctgggccgcaagcaggcagagcgaacgctc
gaccgcaaggcggtggcgcgcctgctggaggagcgcggcgtcaccctgctgggcggcggc
atcgacgaagcgccgcaagcctacaaacgcatcgaggaggtgcttgcccggcaggccgac
ctggtcgatgtggtggcaaaattcacgccgcgggtcgtgcgaatggacagcggcaaagaa
gacatttga
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