Deinococcus peraridilitoris: Deipe_0984
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Entry
Deipe_0984 CDS
T02381
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dpd
Deinococcus peraridilitoris
Pathway
dpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Deipe_0984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpd03021
]
Deipe_0984
03400 DNA repair and recombination proteins [BR:
dpd03400
]
Deipe_0984
Enzymes [BR:
dpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Deipe_0984
Transcription machinery [BR:
dpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Deipe_0984
DNA repair and recombination proteins [BR:
dpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Deipe_0984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AFZ66548
UniProt:
K9ZY05
LinkDB
All DBs
Position
1003925..1007368
Genome browser
AA seq
1147 aa
AA seq
DB search
MTQRIERFGEIAEVIPLPELTEVQVNSFRHFLQDTKAPDQRENAGLQSAFREVFPIDESD
RNRSAGLVLDFLEYKLGDAPYTPEECREKDLTYQAPLYAKLQLIHKDSGLIKEDQVFLGD
LPLMTEDGSFVINGADRVVISQIHRSPGVYFTSSYKGIKKIYTAAIIPMPKRGPWIELEF
NGGVLEMKVNKRKFPVSMLLRVLGHDDTSIKALFTEFDEGVELPEDKSSGMNADEALLRL
FTVLRPGDPPKRDKAITYLYSLLADPKRYDLGKPGRFKMNRKLGTTRDDATLLTFEDGKF
QDAGLIETIRYLLALTYGRAELTVGADEDGVAQTVPVEEDDIDHLGNRRVRTVGELLADQ
LRVGLGRMARGVRERMLLGNPDAATPTKLVNNRPIVAAMREFFGRSQLSQFKDQTNPLAE
LRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRVCPIETPEGANIGLISSLASFSKVND
LGFMEAPYRRVVDGKVTDQVEYMTADIEDRYAIAQANTPLAPDGSFAVDRVLARRRGDPF
LMDPAEIQYMDVSPKQIVSISTSLIPFLEHDDANRALMGSNMQSQAVPLVRAESPAVGTG
VEERVVRDSGTSVVADVTGRVSYVDARAIQVTLTEDQPGLALFKNNVRTYDLVRFTRSNQ
GTNLDQRPIVSVGDVVAPGQVLADGPASELGRLALGQNITIAIMPFDGFNFEDAICISEG
LVRKDFYTSVHIEKDEVEARDTKLGPEKITRDIPGLSEAALRDLDEDGIVRVGAEVKPGD
ILVGKTSFKGESEPTPEERLLRSIFGEKAREVKDTSLRVRSGEGGIVVKTVRFRRGDEGV
DLKPGVREMVRVYVAQKRRLQVGDKVANRHGNKGVVSKILPPEDMPFLPDGTPVDLVFNP
LGVPSRMNLGQILETHLGEVARLTGQKFVTPVFDSATEDAIKEMLQVAAAERIDDRKRGG
FETDVREAEVLERAGKLGVIDRPSGDYDQSQIELARTGKTVLYDGRSGEAISGPVVVGTM
YVMKLYHMVEDKLHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEM
LTIKSDDIEGRDAAYQSIVKGDEVAASTIPESFKVLVKELHSLGLDVEVLDDGDKPVDIF
EGMMPRR
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgacacaacgtatcgagcgcttcggcgaaattgccgaagtcatcccgttgcctgaactg
accgaggtccaggtcaactcgttccggcacttcctgcaggacaccaaagctcccgaccag
cgcgagaacgccggtctgcaaagcgcctttcgcgaagtcttccccatcgacgaatccgac
cgcaatcgcagcgcaggcctggtgctcgattttctggagtacaagctgggtgacgcgccc
tacaccccggaagagtgccgcgaaaaagacctgacctaccaggcgcccctctacgccaag
ctgcagctgattcacaaggacagcggcctgatcaaggaagaccaggtctttctgggcgac
ctgcccctgatgaccgaggacggctcctttgtcatcaacggcgccgaccgcgtggtcatc
tcgcagattcaccgcagccccggcgtgtacttcacgagctcctacaagggcatcaagaag
atctacacggctgccatcatcccgatgcccaagcgcggcccctggattgaactggagttc
aacggtggcgtgctggaaatgaaggtcaacaagcgcaagttcccggtcagcatgctgctg
cgcgtgcttgggcacgacgacaccagcatcaaggcgctgttcacggaatttgacgaggga
gtggagcttcccgaggacaagtcgagcggcatgaacgccgacgaagccctgctgcgcctc
ttcacggtcctgcgtcccggtgacccacccaagcgcgacaaggcgatcacctacctctac
agcctgctggccgatcccaagcgctacgacctgggcaagcccgggcgcttcaagatgaac
cgcaagctcggcacgacgcgcgacgacgccacgctgctgaccttcgaggacggcaagttc
caggacgccggcctgatcgagaccatccgctacctgctcgccctgacctacggccgtgca
gaactcaccgtcggcgcggacgaggacggcgtggcccagaccgtgcccgtcgaggaagac
gacatcgaccacctcggcaaccgccgcgtgcgcacggtgggcgaactgctcgccgaccag
ctgcgcgtgggcctggggcgcatggcgcgcggtgtgcgcgagcgcatgctgctcggcaac
cccgacgctgccacccccaccaagctggtcaacaaccgtcccatcgtggcggccatgcgt
gaattcttcggccgcagccagctctcgcagttcaaggaccagaccaacccgctggccgag
ttgcgccacaagcgccgcatctcggcactcggaccgggcggcctcacgcgtgagcgcgcc
ggctttgacgtacgcgacgtgcaccgcacacactacggccgcgtctgccccatcgagacg
cccgaaggcgccaacatcggcctgatctcctcgctggcgtcgttttccaaggtcaacgac
ctcggctttatggaagcgccctaccgccgcgtggtggacggcaaggtcaccgaccaggtc
gagtacatgacggccgacatcgaggaccgctacgccatcgcgcaggccaacaccccgctc
gcgccggacggctcctttgcggtcgaccgcgtgctggcccgccgccgtggtgaccccttc
ctgatggacccggccgagatccagtacatggacgtgtcgcccaagcagatcgtctcgatc
tccacctcgctgattcccttcctggagcacgacgacgccaaccgcgccctgatgggttcg
aacatgcagtcgcaggccgtgccgctggtgcgcgccgagagccccgccgtgggcaccggc
gtcgaggagcgcgtcgtgcgcgactcgggcaccagcgtcgtcgccgacgtgacgggccgc
gtgtcctatgtggacgcccgcgccattcaggtcaccctgaccgaggaccagccggggctg
gcactcttcaagaacaacgtccgcacctacgacctggtgcgcttcacccgcagcaaccag
ggcaccaacctcgaccagcgcccgatcgtgtcggtcggtgacgtggtcgccccgggccag
gtactcgccgacggcccggccagcgaactcggccgcctggccctcggacagaacatcacc
atcgccatcatgccctttgacggcttcaacttcgaagacgccatctgcatctccgaaggc
ctggtgcgcaaggacttctacacctcggtgcacatcgagaaagacgaagtcgaggcgcgc
gacaccaagctcggccccgagaagatcacccgcgacatcccggggctcagtgaggccgcc
ctgcgcgacctcgacgaggacggcatcgtccgcgtcggcgcggaagtcaagcccggcgac
atcctggtcggcaagacttccttcaagggagaaagcgagcccaccccggaagagcgtctg
ctgcgctcgatcttcggtgagaaggcccgtgaggtgaaggacacctcgctgcgcgtgaga
agcggtgaaggcggcatcgtcgtgaagaccgtgcgcttccgccgcggcgacgagggcgtg
gacctcaagcccggcgtgcgtgaaatggtgcgggtatacgtcgcccagaaacgccgcctg
caggtgggtgacaaggtcgccaaccgccacggcaacaagggcgtggtctccaagatcctg
cctcccgaagacatgcccttcctgcccgacggcacccccgtcgacctggtgttcaaccca
ctcggcgtgccgagccgcatgaacctcgggcagattctcgaaacgcacctcggtgaagtc
gcgcgcctcacgggccagaagttcgtgaccccggtgttcgactcggccaccgaggacgcc
atcaaggaaatgctgcaggtcgccgctgccgagcgcatcgacgatcgcaagcgtggtggc
tttgagaccgacgtgcgcgaagccgaagtgctcgagcgcgccggcaagctcggcgtgatc
gaccgaccgagcggcgactacgaccagtcgcagatcgaactcgcgcgcaccggcaagacc
gtgctgtacgacgggcgcagcggtgaagcgatcagcggacccgtggtggtcggcaccatg
tacgtcatgaagctctaccacatggtggaagacaagctgcacgcccgctccaccggcccc
tacagcctgatcacccagcagccgctgggcggcaaggcgcagttcggcggtcagcgcttc
ggcgagatggaagtctgggcgctcgaagcctacggcgccgcgcacaccctgcaggaaatg
ctcaccatcaagtccgacgacatcgaagggcgcgacgccgcgtaccagtcgatcgtcaag
ggcgacgaggtggccgccagcaccattcccgagtccttcaaggtgctcgtgaaagaactc
cactcgctgggtctcgacgtcgaggtgctcgacgacggcgacaagccggtggacatcttc
gaagggatgatgccgcgccgctaa
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