Deinococcus peraridilitoris: Deipe_0985
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Entry
Deipe_0985 CDS
T02381
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dpd
Deinococcus peraridilitoris
Pathway
dpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Deipe_0985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpd03021
]
Deipe_0985
03400 DNA repair and recombination proteins [BR:
dpd03400
]
Deipe_0985
Enzymes [BR:
dpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Deipe_0985
Transcription machinery [BR:
dpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Deipe_0985
DNA repair and recombination proteins [BR:
dpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Deipe_0985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
CIS_TMP
Motif
Other DBs
NCBI-ProteinID:
AFZ66549
UniProt:
K9ZZC4
LinkDB
All DBs
Position
1007454..1012031
Genome browser
AA seq
1525 aa
AA seq
DB search
MKDFSKVRIAIASPQRIRDWSYGEVEKPETINYRTLKPEREGLFDERIFGPQKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAA
QLEKVLYFSSFLVIDPQNAQKDGRPLKRGELLSDEEYRELRFGRQETYSLPVGVEANIRD
GEYVTRGQSLGGNVVSKMDGLAQFRFPRRAEIAYREEAQARVLLPETALVAQESFRAGEI
LAELEEGYTITSPVDGIAFLHDLGEDSVLVDVRSDEDEILARVYVPHGMDVTVAQGERLE
AGTALATATSGARLRVSRASRLENLKTGKKGDTTVTLHWNRTESYPINPTMHVLVGDGSE
VRAGQRIIGAIDEEQMVTAERDGVITLHAPASIIVSKAKVYAYQDEPLVVNGDRVDPGDD
LADGGALRSEISGRIEIDLVRKQVRVIESYDFTAKMGAEAVKELLDDIDLVTLEAELNEQ
MKDNSRHKRAKARKRLEVVRSFVKSGNHPSWMILETVPVMPPDLRPMVQVDGGRFATSDL
NDLYRRLINRNNRLKKLMGQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDRSL
RSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLRLHQCGVPKRMALELFKPFLFRV
LEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGIQAFEPVL
VEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPANGEPNVK
PSRDIILGIFTLTQLRKDNEGQGREFASPQEALAAFEAGEVRLNSQIVVNGKETSPGRLK
YNFSSPDEAILAVERGEIDYQDHVRIRVKGQSYETSAGRVMFRRLVQEALGDHRSELVDA
LVDLNTAYEKDGLKDMILACFKTLGIEATAQLLDALKDSGFRLSTTSGITIGIDDVVIPP
AKQGILAEADGKLSEIEQNFDFGFLTEEERYKQVVQLWNDTTDSVKNAVFENFSKNYPFN
PLWIMSQSGARGNPQQIRQLAGMRGLMAKPDGSTIEVPIRASFREGLTVLEYFISTHGAR
KGGADTALRTADSGYLTRKLVDVAHEIVVRDVDCGTTDYTVMPLGHTDERTGEWRSRKAS
EIETSLYGRTVTMDVELGERTIYAGDMLALEDIKAITKNAQSIGEVFVRTPLNCRVRSGV
CQRCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGSDITLGLPRVI
ELFEARKPKNQAVVADRDGAVRLEEDDERYLVKIEADEAEYSSKTAIKVNKAMRLIVREG
DRVNAGDPLTRGAVNPHDLLTYRDIEATQRYLVEEVQRVYRSQGVKVHDKHIETIVRQML
KYVEISDGGDTPLLEGQTVERWDVEAINDALEAGKTPASWKPVLLGITKSSLSTQSWLSA
ASFQHTTHVLTEASIKGQVDDLIGLKENVILGKLIPAGTGLDLVRKSQVADDRTIERYRP
EIGDLPRRDAPRPETPTSIQPGYDD
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttcagcaaagtacgcatcgccatcgccagcccccagcgcattcgcgactgg
agctatggcgaggtcgagaaacccgaaaccatcaactaccgtaccctcaagcccgagcgc
gaaggcctcttcgacgagcgcatcttcggaccgcaaaaggactacgagtgcgcctgcggc
aagtacaagcgccagcgctacgaaggcaaggtctgcgagcgctgcggcgtggaagtcacc
agcagcaaggtccggcgttaccgcatgggtcacatcgacctcgcgacgcccgccgcgcac
atctggtacgtcaaggacacccccagcaagatcggcacgctgctcgacctctcggcggcg
cagctggaaaaagtgctgtacttcagctccttcctggtgatcgatccccagaacgcccag
aaggacgggcgcccgctcaagcgcggtgaactgctcagcgacgaggagtaccgcgagctg
cgctttggccgtcaggaaacctacagtctgcccgtgggcgtcgaggccaacattcgtgac
ggcgagtacgtcacgcgtggccagagcctcggcggcaacgtcgtcagcaagatggacggc
ctcgcgcagttccgctttccgcgccgcgcggagatcgcctaccgcgaggaagcgcaggcg
cgtgtactgctgcccgaaaccgccctggtggcgcaggaaagcttccgcgccggtgagatc
ctggccgagctcgaagaaggctacaccatcacctccccggtggacggcatcgccttcctg
cacgacctcggcgaggacagtgtgctggtcgacgtgaggagtgacgaggacgaaatcctg
gcgcgcgtgtacgttccgcacggcatggacgtcaccgtcgcgcagggtgagcgcctggaa
gccggtacggccctggcgaccgccacctccggtgcgcgcctgcgcgtcagccgtgccagc
cgcctggagaacctcaagaccggtaaaaaaggtgacaccaccgtcaccctgcactggaac
cgcaccgagagctaccccatcaatcccaccatgcacgttctggtgggcgacggcagcgaa
gtgcgtgccggccagcgcatcatcggcgccatcgacgaagagcagatggtcaccgccgag
cgtgacggcgtcatcacgctgcacgcgccggccagcatcatcgtcagcaaggccaaggtg
tacgcctatcaggacgagcccctggtcgtgaacggcgaccgcgtcgatcccggcgatgac
ctcgccgacggcggcgcgctgcgcagcgagatctcgggccgcatcgaaatcgacctggtg
cgcaagcaggtccgtgtgatcgagtcttacgacttcaccgccaagatgggcgccgaggcc
gtcaaggagctgctggacgacatcgacctcgtgacgctcgaagccgagctcaacgagcag
atgaaggacaacagccgccacaagcgggccaaggcccgcaagcgcctggaagtcgtgcgc
agctttgtcaagagcggcaaccacccctcgtggatgatcctggagaccgtgccggtcatg
ccgcccgatctgcgccccatggtgcaggtggacgggggccgcttcgcgacttcggacctc
aacgatctctaccgccgcctgatcaaccgcaacaaccgcctcaagaaactgatggggcag
ggcgcgccggacatgatcatccgaaacgaaaaacgcatgctgcaggaagccgtcgacgca
ttgatcgacaacggccgccgtggcagccccgtcaccaaccccggctccgaccgcagcctg
cgctcgctgaccgacctgctgggcggcaagcagggacgcttccgtcagaacctgctcggc
aagcgcgtggactactcgggccgcagcgtgatcgtggtcggtccgcagctgcgccttcac
cagtgcggggtgcccaagcgcatggcgctcgagctcttcaagcccttcctgttccgggtg
ctcgaggagaagggcgaagtcaccaacatcaagcaggcccgcaagatgctcgagcgctac
cgtgacacccgtgacagcgtttgggacgcccttgaagaggtcatcgaggacaaggtcgtg
ctgctcaaccgcgcaccgaccctgcaccgcctgggcattcaggccttcgagccggtgctg
gtggaagggcagtccatccagctgcaccccttggtctgtgaagccttcaacgccgacttc
gacggcgaccagatggccattcacgtgcccctcagcgcgcaggcgcaggccgaggcgcgc
attcagatgctcagcgcgcacaacctgctctccccggccaacggcgagccgaacgtcaaa
cccagccgtgacatcatcctgggcatcttcaccctgacccagctgcgcaaggacaacgag
ggccagggccgtgaattcgccagtccgcaggaggcgctggcagccttcgaggcgggcgaa
gtgcgcctgaactcgcagatcgttgtgaacggcaaggaaacctcgccgggccgcctgaag
tacaacttctccagccccgacgaggcgatcctggccgtcgagcgcggagagatcgattat
caggatcacgtgcgcatccgcgtcaagggccagtcttacgagaccagcgccggacgcgtg
atgttccgccgcctcgtgcaggaagccctcggcgaccaccgcagcgagctggtcgacgcc
ctggtggacctcaacaccgcctacgaaaaagacggcctcaaggacatgatcctggcctgc
ttcaagaccctggggatcgaggcgaccgcgcagctgctcgacgccctgaaggacagcggc
ttccgcctgtccaccacctcgggcatcaccatcggcatcgacgacgtggtgattccgccg
gccaagcagggcatcctggccgaggccgacggcaagctcagcgagatcgagcagaacttc
gacttcggcttcctgaccgaagaagagcgctacaagcaggtcgtgcagttgtggaacgac
accaccgacagcgtcaagaacgcggtgttcgagaacttctccaagaactaccccttcaac
ccgctgtggatcatgagccagtcgggcgcgcgtggtaacccccagcagatccgtcagctg
gccggcatgcgcggtctgatggccaagcccgacggcagcaccatcgaggtgcccattcgc
gccagcttccgtgaaggcctcacggtgctggagtacttcatcagcacgcacggcgcccgt
aagggtggcgcggacaccgcgctgcgcaccgccgactcgggctacctgacccgtaaactg
gtcgacgtggcgcacgaaatcgtcgtgcgtgacgtggactgcggcaccaccgactacacc
gtcatgccgctcggtcacaccgacgagcgcaccggtgagtggcgcagccgcaaggccagc
gagatcgagacttcgctctacggccgcacggtcacgatggacgtcgaactcggtgagcgc
accatctacgccggggacatgctggcgctcgaggacatcaaggcgatcaccaagaacgcc
cagagcatcggcgaggtgttcgtgcgtacgccgctcaactgccgtgtgcgctcgggtgtc
tgccagcgctgctatggctacgacctttcgcaggccaagccggtcagcatgggcgaagcg
gtgggcgtcgtggccgccgagtcgatcggcgagcccggcacgcagctcaccatgcgcacc
ttccacaccggtggtgtggcaggcggcagcgacatcaccctgggtctgccccgcgtgatc
gaactgttcgaggcgcgcaaacccaagaaccaggccgtggtcgccgaccgtgacggcgcc
gtgcgcctcgaggaagacgacgagcgttacctcgtcaagatcgaggcggacgaagccgag
tacagctccaagaccgccatcaaggtcaacaaggccatgcgcctgatcgtgcgtgagggg
gaccgcgtgaatgccggcgatccgctgacgcgtggcgccgtgaacccgcacgacctgctg
acctaccgcgacatcgaggccacccagcgttacctggtggaagaagtgcagcgcgtatac
cgcagccagggcgtgaaggtgcacgacaagcacatcgagaccatcgtgcgccagatgctg
aagtacgtggaaatcagcgacggtggcgacaccccgctgctcgaaggccagaccgtcgag
cgctgggatgttgaggccatcaacgacgccctggaggccggcaagaccccggcgagctgg
aagccggtgctgctgggcatcaccaagtcgagcctcagcacccagtcgtggctctcggcg
gcgtccttccagcacaccacccacgtgctgacggaagccagcatcaagggtcaggtggac
gacctgatcggcctgaaggagaatgtcatcctcgggaagctgattccggccggaacgggc
ctcgacctcgtgcgcaagtcgcaggtggccgacgaccgcaccatcgagcgctaccgtccc
gagatcggcgacctgccgcgccgtgacgcgccgcgccctgaaacacccaccagcattcag
cccggttacgacgactga
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integrated database retrieval system
