Deinococcus peraridilitoris: Deipe_2643
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Entry
Deipe_2643 CDS
T02381
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dpd
Deinococcus peraridilitoris
Pathway
dpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deipe_2643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpd03019
]
Deipe_2643
Enzymes [BR:
dpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Deipe_2643
Messenger RNA biogenesis [BR:
dpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Deipe_2643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Flavi_DEAD
HEM4
Motif
Other DBs
NCBI-ProteinID:
AFZ68108
UniProt:
L0A2L4
LinkDB
All DBs
Position
2642195..2643628
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AA seq
477 aa
AA seq
DB search
MTTTFADAFSALDLHASLQRAVGELGYAKPTPIQALALPPALQGRDVLGAAQTGSGKTAA
FLLPILQRLQGLPRGKTRALVLAPTRELAAQIEESALALAKFTDVRVASVFGGVSMKPQE
KAFRGGTDLIIATPGRLLDHFQHPYARLEALEVLVLDEADRMLDMGFLPDIRRVLRHLPA
RRQTLFFSATMPAPILQLSRELLRDPVMVGAERKAAPAQGVTQSIYPVPEELKTDLLLEL
LRQPSMESAIVFTRTKHRANRLAEKLIKAGVKAERIHGNRSQAARTEALAGFKSGKYRVL
VATDIAARGIDVEALGHVVNFDVPEIPEDYIHRVGRTARAEMTGEALTFVAPQEEGDLKA
IERAVGRKLDRVTLPDFDYRARPSERFEVPIGERIAEIRARKSEERARAKAKAERKAAQD
PQPGGRGPAGSGAGRAATPSRSSASGPASAAQPAREGGRTGPSRPSRGRGRGGSRSS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaccactacttttgcagacgcgttcagcgcgctcgacttacatgccagcctgcagcgc
gcggttggcgaacttggatacgccaagcccacacccattcaggcgctggccctgccgccg
gccttgcagggccgtgacgtgctgggtgccgcgcagacgggcagcggcaaaacggccgcg
ttcctgctgccgattctacagcgcctgcagggcctgccgcgcggcaaaacgcgcgcgctg
gtcctggcgcccacccgggagctcgccgcgcagatcgaagaaagcgccctggcactcgca
aaattcacggatgtgcgcgtagcgagcgtcttcggcggtgtcagcatgaagcctcaggaa
aaggcgtttcgtggtggcaccgacctgatcatcgcgacgcccgggcgcctgctcgaccat
ttccagcacccttacgcccgcctggaggcgttggaagtgctggtgctcgacgaggccgac
cggatgctcgacatgggctttctgcccgacatccgccgggtgctgcgtcacctgccggcg
cggcggcagacactcttcttctcggcgaccatgcctgccccgattctgcagctgagccgt
gaactgctgcgtgacccggtgatggtgggagccgagcgcaaggcggcccccgctcaggga
gtcacccagtcaatctatccggtgcccgaagagctcaagaccgacctgctgctggagctt
ttgcgccagcccagcatggaaagcgcgattgtcttcacccgcaccaaacaccgcgccaac
cgcctcgccgaaaaactgatcaaggccggggtcaaagccgagcgtattcacggcaaccgt
tcccaggcagcgcgcaccgaggcgctggcgggcttcaagtccggcaagtaccgggtgctg
gtcgccactgacatcgccgcgcgaggcatcgacgtcgaagcgctcgggcacgtggtgaat
ttcgacgtgccggaaatccccgaggactatatccaccgggtgggccgcactgcgcgcgcc
gagatgaccggtgaggccctgacgtttgtagcgccccaggaagagggcgacctcaaggcc
atcgagcgtgcagtgggtcgcaagctcgaccgggtgactctgccggatttcgattaccgc
gcgcggcccagcgagcggttcgaggtgcccatcggtgagcgcattgccgaaatccgcgcc
cgcaagtccgaagagcgcgcccgcgccaaggccaaggccgaacgcaaagcggcccaggat
ccccagcccggcggacgcggcccggccggttcaggcgcgggccgtgcggcgacaccttcc
cggtcatcggcgagcggtccggcgtctgctgcccaaccggcccgcgaaggcggccggacg
ggcccttcgcgtccctcgcggggtcgtggccggggtggttcacgctccagctga
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