Deinococcus peraridilitoris: Deipe_3180
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Entry
Deipe_3180 CDS
T02381
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dpd
Deinococcus peraridilitoris
Brite
KEGG Orthology (KO) [BR:
dpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpd03019
]
Deipe_3180
Enzymes [BR:
dpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Deipe_3180
Messenger RNA biogenesis [BR:
dpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Deipe_3180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
HA2_N
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFZ68623
UniProt:
L0A422
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All DBs
Position
3180139..3182634
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AA seq
831 aa
AA seq
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MNLPVRDALPELKRTLQNSEIVLFQAPPGAGKSTLLPLELLGEDWLAGQKIIMLQPRRLA
ARGVAVRMAEMLGEAVGESVGYRVRFESRVSARTRIEVVTEGILTRFLQRDPSLPGVGLV
IFDEFHERSLNADLAYVLTREVQGALRDDLKVLIMSATLNEDLPRALKLNAPVLSAPGRP
FPVEVRYAPNDPGGPLADLVTQAVTQALQDLEGDVLAFLPGSGEIRRAQAALQERHPEVP
ILPLYGDLPPAEQRRAILPDPQGARRVVLATSIAETSLTLEGVRVVVDSGFSRVSRFDAA
SGLTRLVTERVTRDAADQRAGRAGRTAPGVCLRLWSERTHALLAAQRKPEILEADLAPTV
LELARWGVRDAASLPWPDAPPERHLQAARALLSQLDALDEDGRLTGRGGELLDIPTHPRL
AHLLLEGCQSGNTALACDVAALLEERDPLGREAGADLATRVEALRAFRAGVRRVGADRGV
LERIERLSAQWRRLLRLTGVNDEVGPHELGALVASAYPERVAQRRPGERLRYRLSSGQGV
RLSADDDLAGAEYLAVAHLAPGDAQSAGEGRIFLAAELAAGVLEARARAVDEVRWDSRSG
TLVARRTRRVGELVLDAEALNVIPEAPRQEALLEALRREGAALLSFTPEVRSWQARVLSL
RVWRPNENWPDVSDEALLESADVWLLPFLGSVRKREDFARIDLKALLGALLPWPESARLD
ELAPARLTVPSGSAIRLQYAPSGASPVLAVKLQELFGLAETPTVNDGRTAVVLHLLSPAG
RPVQVTQDLRSFWARGYLEVKKELKGRYPKHPWPDDPWSAEPTRRARPRGH
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
gtgaatctcccggtgcgtgacgcgcttcccgagctgaaacgaaccttgcaaaacagcgaa
atcgtcctcttccaggcgccgcccggcgcgggcaagagcacgctgctgccgctggaactg
ctgggtgaggactggctggcagggcaaaaaatcatcatgctgcagccgcgccgcctggcg
gcccgtggagtcgcggtgcgcatggccgaaatgctgggagaggcggttggggagagcgtc
ggttaccgggttcgcttcgaatcgcgcgtgagcgcccggacccgcatcgaagtcgtcacc
gagggcattctgacacgtttcctgcagcgggacccgtcactgcccggcgtcggtctggtg
atcttcgacgagttccacgagcgttccctgaacgccgatctcgcctacgtcctgacccgc
gaggtgcagggcgccctgcgtgatgacctgaaagtgctgatcatgtccgccaccctgaat
gaggacctgccgcgcgcgctcaaactgaacgccccggtcctgagcgcgcccggtcggcct
tttcccgtggaggtgaggtacgccccgaatgatccgggtgggccgctggctgacctggtg
acgcaggccgtcacgcaagcgttgcaggacctggaaggtgacgtactggccttcctaccg
ggaagcggtgaaattcgccgcgcgcaggcagcgctgcaggagcgccatcccgaagtgccc
atattgccgctgtacggcgacttgcccccggccgagcagcgccgcgcgattttgcccgat
ccgcagggcgcgcgacgggtggtgctggccacctcgatcgctgagacgagcctgaccctg
gagggggtgcgggtggtggtggactcgggattttcgcgcgtgtcacgctttgacgccgca
agtggcctgacacgcctcgtgaccgagcgggtcacccgcgacgccgccgatcagcgtgcg
ggccgtgcgggccgcaccgcgcccggagtgtgcctgcggttgtggagcgagcgcacccac
gccctgctggcagcgcagcgcaagcccgagattctcgaagccgacctcgcgcccactgtg
ctggaactggcccgttggggcgtgcgtgacgcggcgagcctgccctggccggacgctccc
cccgagcgacacctgcaggccgcgcgcgccctgctgtcacaactcgacgcactcgacgag
gacggccgcctgaccggacggggcggggaactgctcgacattcccacccacccgcgcctc
gcgcacctgctgctggaaggctgccaaagcggcaacaccgctcttgcgtgcgacgtggcc
gcgctgctcgaagagcgcgatccgctgggacgtgaagcgggagcggatctggcgactcgc
gtggaggccctgcgcgctttccgggcaggcgtgaggcgcgtgggcgcagaccggggcgtg
cttgagcgaatcgagcggctctcggcacagtggagacggttgctgcgcctcactggcgtg
aacgatgaagtgggaccccatgaattgggcgcgctggtggcgtccgcgtatcccgaacgc
gtggcgcagcggcgccccggtgagcgcctgcgctaccgtctgtccagcgggcaaggcgtc
cggttgagcgccgatgacgacctcgcgggggcggagtacctggcggtcgctcatctggcg
cccggtgatgcccaaagcgcgggggagggccggatcttcctggcggccgagctggcggcc
ggtgttctggaagcgcgcgcgcgtgccgtggacgaggtgcgctgggattcgcgctcgggc
accctggtcgcccgtcgcactcggcgtgtgggggaactggtgctggacgccgaggccctg
aacgtcattcccgaagcacctcgccaggaggcgctgctggaagcgctgcgccgggaaggc
gcggcgctgctctcctttacccccgaggtccgctcctggcaggcacgcgtgctcagcctg
cgcgtctggcgcccgaacgaaaattggcctgacgtgagtgacgaggcgctcctcgagagc
gcggatgtgtggctgctcccgtttctgggcagtgtgcgcaagcgagaagacttcgcccga
atcgatctgaaagcgctgctcggggcgctgctgccctggcctgaaagcgcccggctcgac
gaactggcgcctgcccggctgaccgtgccaagcgggagcgccatccgcctgcagtacgct
ccctccggggcctcgcccgtgctggccgtcaagctgcaggagctgttcgggctggccgag
acgcccaccgtgaatgacgggcgcacggcggtggtgctgcacctgctgtcacctgccgga
cggcccgtgcaggtcacccaggatctgcgcagcttctgggcacgtgggtaccttgaagtc
aaaaaggaactcaagggacgctatcccaaacacccctggccggacgacccctggagtgcc
gaaccgacccggcgtgccaggccacgcggtcactga
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