Deinococcus peraridilitoris: Deipe_3680
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Entry
Deipe_3680 CDS
T02381
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dpd
Deinococcus peraridilitoris
Pathway
dpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deipe_3680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpd03021
]
Deipe_3680
03019 Messenger RNA biogenesis [BR:
dpd03019
]
Deipe_3680
Transcription machinery [BR:
dpd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Deipe_3680
Messenger RNA biogenesis [BR:
dpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Deipe_3680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_22
AAA_25
Spore_III_AA
ATPase_2
NACHT
AAA
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AFZ69106
UniProt:
L0A5I9
LinkDB
All DBs
Position
3717556..3718884
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AA seq
442 aa
AA seq
DB search
MMDPQTRHEHTRRDESRRAEGRDEGLKFQDLQQKILPELHLIAAGLGIDNYRKLKKDALA
LAILERQAESQGQALARGFLEIAADGYGFLQDDLLSVESRSVLVSAGLIKQYQLRTGDEV
IGRARPPRDNERYGTLQRVEAVNGLDPQAAAARPRFDDLTPTFPDRQLVLEDPLMDDGHA
LRVVDLLVPIGLGQRGLIVAPPKAGKTTLLKKIANSIVKNYPDITVIVLLVDERPEEVTD
FRESVQGAQVVASTFDEPPQNHVRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLV
TPPTGRTLSGGLDSNALHWPKRFLGAARNIRGGGSLTILATALVETGSRMDDVIFEEFKG
TGNMEMVLSRRLEERRIFPAMDILKSGTRREELLLKPDVLHKTWLLRKVISDMDPAEAMD
MMLGRMGKTANNAEFLATLAAR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgatggaccctcagactcgccatgaacatacgcgccgcgacgaatcgcgccgggccgaa
ggccgcgacgaaggcctgaagtttcaggacctgcagcagaagatcctgcccgaactgcac
ctgattgccgccgggctgggcatcgacaattaccgcaagctcaaaaaggacgcgctggcc
ttggccattctggagcgccaggccgaaagccagggccaggcgctggcgcgcggtttcctg
gaaattgcggccgacggctacggctttctgcaagacgacctgctgtccgtcgagtcgcgc
agcgtgctggtttcggcgggtctgatcaagcagtatcagctgcgcacgggtgacgaggtc
atcggacgcgcccggcccccccgtgacaacgaacgctacggtaccctgcagcgcgtggag
gcggtcaacggcctcgatccacaggcagccgctgcccgtccgcgtttcgacgacctgacc
ccgacttttcccgaccgtcagctggttctcgaagatcccctgatggacgatgggcacgcc
ctgcgggtggtcgatctgctggtgcccatcggcctggggcagcgcggcctgatcgtcgcg
cctcccaaagcgggcaagacgaccctgctcaaaaagatcgccaacagcatcgtcaagaat
tatccggacatcacggtgatcgtgctgctggtcgacgaacgccccgaggaagtcaccgac
tttcgggaaagcgtgcagggcgcacaagtggtggcgagtacgtttgacgagccgccccag
aaccacgtgcgggtggccgagttcgtgcacgagcgggcacgccgcatcgtggaggaagga
ggtcacgtggtgattctgctggactcgatcacccgcctcgcgcgcgccaacaacctggtc
acgccgcccacgggccggacgctgtcgggggggctcgattcaaacgccctgcattggccc
aagcggtttctgggtgcggcccgcaatatccgtggcggcgggagcctgaccatcctcgcg
actgccctggtggaaaccggttcgcgcatggatgacgtgatcttcgaggagttcaagggg
accggcaacatggaaatggtgctgtcgcgccgcctcgaggagcgccgcatctttccggcc
atggacatcctcaagtccggcacccgccgtgaggagctgctgctcaagccggacgtgctg
cacaagacctggctgctgcgtaaagttatctccgacatggaccccgccgaggcgatggac
atgatgctgggccgcatgggcaagactgccaacaacgccgaatttctcgcaacgcttgcc
gcgcgctga
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