Drosophila persimilis: 6587360
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Entry
6587360 CDS
T01063
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dpe
Drosophila persimilis
Pathway
dpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6587360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpe03019
]
6587360
Messenger RNA biogenesis [BR:
dpe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
6587360
mRNA degradation factors
5'-3' decay
Decapping complex
6587360
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hel_4HB_N
LysR_substrate
Motif
Other DBs
NCBI-GeneID:
6587360
NCBI-ProteinID:
XP_026849585
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MDNSFFGFDTTIPEDEGGDGRIGEEEYDALNDETFGSAINGDWEEAHETLVRLGGNGDKV
RKRGGFADRSAFGGFSAGGNGVPRQTNVLSSAPSSSGSTPAPFNAPFPGTRNMEDADLEL
NLSSMKLDDVDISSFLDSEVGNLSNRINLDSAVWASPPFPNNQPLFQEGFRSAFRPQTQM
KIQQEANANLALHHMHPQAGPKISTLEDIERNLIIQQAIPKLQQQQQPKDRKAFDEFSLA
NRQHVLPSTIPLQQQQQQQPKPQNKGEHIQNHLHTPAHAITKLIAVPPGFLTAPQISPPR
TNLGFHGPHPLPEMLPNPQSQQQLNGLAGNRVPPGFIYPPGLPGSMPQLQQYPLLQQHGA
CALPPNFPLAGNQRPLPTPHLPTALNNFAMHPSFNAMRAAGLHPAAFMQPAHPLQHPQSR
MPPHPLQAANNLLNQQQNSMFNMFNMRLVQEIQQNHPLLQQNAVVARQLQQSRGGSVPSD
QRQKQQLQQQQLNRRPDASGNLPQDEYDEYANLMSTRDKHWLIGIQLSQLNTDTPYIDDY
YYTVYRERKALQNGQVRHSQAHKDNQLNHPLTQPRGHAQLILVQLGNKNGTRNGHGQNRE
RRNSENTNTCSTGVSTNNAVSGSGGTNNTLPGYIFSPLKFENSLGKLQYGSVTAPRKIID
ADIMGGEASLGDIAGSSATSSMSTMSGVNAKSNAGTPLLPSACCDITPSSMRKSRHILLL
IETLYRYLLKLEDLENTDVMATIVLKKKKEAERIAALEQLEMANKTPEERAAEASNPQSI
NPQLNNKFNYEIETTDALVNKLKSGLAFDKVVAMMNVRKGKILLRRVMPFLTEHSVCWTV
WSGVFCSLQTVVKKDKDDPEGVLYALYPEFKKHISKASFETVVTISAAITLNDNKLTGIF
CSRFGILSLVALILRAQEIYVSKIDPTLSDANRQEWRKFLAQVASCLTRTIQNQTISAAI
ESDAIQPLMDHFENFKDLKLDALLALITEARHQID
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggataactcgtttttcggattcgacacaactataccggaggacgaaggtggcgatggg
cgcattggagaagaagaatatgatgcgctcaacgatgaaacctttgggtctgcaataaat
ggagattgggaagaagctcatgaaacgctggtgcgccttggcggaaatggcgacaaagtt
cgcaagagaggtggtttcgctgatagaagtgcattcgggggattttcagccggtggcaac
ggcgtgcccagacaaacgaatgtgctttcatcagctccctcgtcgagtggctcaacacct
gcgccattcaacgcaccttttcctggcacacgaaatatggaagacgcagacttggagctg
aatctgtcttccatgaagttagatgatgtcgacatttcctcttttctcgatagcgaagtg
ggaaaccttagcaatcgcattaacttggactctgctgtatgggcgtcgccgccgtttccg
aataaccaaccgttatttcaggaaggctttcgcagtgcgtttaggccgcaaacgcagatg
aaaatccagcaagaggccaatgcaaatttagcattacatcatatgcatcctcaagctggt
cctaaaatctcgacccttgaggatattgaacgcaatttaatcattcagcaagcaataccg
aagctgcaacagcaacagcaaccaaaagatcggaaagcgtttgatgaatttagcctggct
aaccggcagcatgtgctaccatcaacaataccgctgcaacagcaacagcagcagcaacct
aaaccacaaaacaaaggtgagcatatacaaaatcatttgcacacaccagcacatgctata
acgaaattaattgcagtgccccctggattcttgacagcgccgcaaatctcgccaccaagg
acaaatttgggattccatggcccccatccgttacccgagatgttgccaaatccccaatcg
caacaacaactgaatggtttggcaggaaatcgggtgccgcctgggttcatctacccacca
ggtttgccaggaagtatgccccaattgcaacagtatccactgctccaacaacacggtgcc
tgtgccttgcccccaaactttcctctagccggcaatcagcgtccactgccaaccccacat
ctgcccacagccctaaacaactttgcaatgcatccaagtttcaatgcaatgcgagctgct
ggcttgcatccggcggcctttatgcagcctgcgcatccactccaacacccacagtcacga
atgcccccacatcctttgcaggcagccaacaatttgctcaaccagcagcaaaactcaatg
ttcaatatgttcaacatgcgcctcgtgcaggagatccaacaaaaccatccgcttcttcag
caaaatgcggtcgttgcgcgccagctccagcaaagtcggggcggatctgtccctagcgat
cagcgtcaaaagcaacaactacagcagcaacagctaaatagacgtccagacgcatctggg
aaccttccgcaggatgaatacgacgaatatgcaaatctaatgagcacacgggacaagcac
tggttgatcggtatacagttatcacagctgaatacagacaccccctacattgatgactac
tactacacggtctatagagagcgcaaggccctgcagaatggtcaggtgcgacacagtcag
gcccacaaagacaaccagttgaaccatcctttaacgcaacccagaggccatgcacaactt
atactcgttcagttgggcaacaaaaacggcacacgcaacggacatggacagaaccgcgag
cggcggaactcggaaaacacgaacacttgcagcacgggtgtcagcacaaataatgcagta
agtggaagtggagggaccaacaacactttaccgggatacattttctcgcctctgaagttc
gagaattcgcttggtaaattgcaatatggcagtgtgacagctccacgtaaaattattgac
gctgacatcatgggcggtgaggctagcctcggggatatagcaggaagctcggccacttca
tcaatgagcacaatgagcggggtaaatgcaaagtctaacgccgggacaccacttctacca
agtgcttgttgtgatatcacacccagtagtatgcgcaaatcacgtcacattttattgctg
atagaaacgctgtatcgctatctactgaaactagaggacctggaaaatacagacgttatg
gccacgattgttctaaagaaaaagaaggaggccgaacgaattgcagctctagagcagctt
gagatggcaaacaaaacacctgaggagcgagccgccgaagcatctaatccacaaagtatc
aatccacagctgaataataaattcaactacgaaatagagacgactgatgccctggtaaat
aaactaaagtcaggtttggcttttgacaaggtcgtagctatgatgaatgtgcgcaaaggc
aagatacttttacgtcgcgttatgccgtttcttactgagcatagtgtatgctggacagtg
tggagtggagtcttctgctcgctacagactgttgttaagaaggacaaagacgatcctgag
ggcgttctctatgctttgtacccagaattcaaaaagcacatcagcaaagccagctttgaa
acagtcgtcaccatttcagcggcaatcacgctgaacgacaataagctaacgggaattttc
tgcagtcgctttgggatcttatcgcttgttgccttgatacttcgtgcccaagaaatatac
gtgtccaaaattgacccaacgcttagcgacgcaaataggcaggaatggcgcaagtttctt
gcgcaggtagcgtcttgcctcacccgaaccatacagaatcagactatctccgcagccatt
gagtcagatgcgattcaaccgctaatggaccattttgaaaattttaaagacctaaaactc
gatgcccttctagcattgataactgaggccaggcatcaaatcgattaa
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