Drosophila persimilis: 6593127
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Entry
6593127 CDS
T01063
Name
(RefSeq) uncharacterized protein LOC6593127 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dpe
Drosophila persimilis
Pathway
dpe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6593127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpe03021
]
6593127
03019 Messenger RNA biogenesis [BR:
dpe03019
]
6593127
Transcription machinery [BR:
dpe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
6593127
Messenger RNA biogenesis [BR:
dpe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
6593127
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
Pcf11_helical
zf_PCFS4
Pfc11_Clp1_ID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
6593127
NCBI-ProteinID:
XP_026842560
LinkDB
All DBs
Position
Unknown
AA seq
1893 aa
AA seq
DB search
MEQLFQSYRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYAHVIVRVVEYYIS
QVPPEFKLPILYLIDSIIKNVRSSYVQLFAQCIVNIFLNAFESVQHSQSQLLEKVRERMY
ALRQTWNEVFPPSKMYALDVKVKRLDNNWPITAKNPTNKIHVNPAIHVNPDFLKTGLVPG
MPVNSTLPSDMEEILQAKTRELLELKKRKLELELEQTKKHLEEQERQLNQATDAIAVAPN
VAMPAPPASVAALRPPIMDPVVRNSRNAGNPGLPNTPAAQQPFSAKSRVNPVNPALLNSV
RQRDPRLARQMQSQVEAAPSRSSDPRLEGKSSSSSHKSSRSRSKSPVRNSSRSTKSNNGS
SSHPNSSSNRKRSESKSSTSSSGSDARHKSGGGASSSSSTLSPAKRSSKPSAKEHSDRHD
RNGSPSNSKRKSTSPTTSPSKSKRNAAHKSSSSMRGKSSSTRSRSRSPIFMDVDLRSGGG
KSPEQKTAAPESLSQVAAAASASSSASALAAAVAAKVTIITNDLEKPNLSTALLLSPSTS
ASASALAAASAPLVNQSSPQGNVSETLQQSINKLLQVQGITGEKRSADSLPPEIDGDEQP
PQQKRSKSTKLDALFGSEDVDLRREIPAVVKPGSANAVIVVEDDSMDNCDVEKPQSKTNS
QLKRPSLDELRAKLAKSARLHNKLSGKSDKVRDQSVVQRLKQLAELKANDDSQEAHDEKM
RTILSQAQEMYENHNMNQEQYKDLVQKVVAINENSKMKESRRRPDGAEVERNAARDAVLR
KRIPKLKSNENHSSGSPRSDGSPRYEDQPIQGSTSTEKPTQNKREKSKRENKRRKPSKWG
EQVDPAAAQRAAWQLANVNNNNNNNNNNNKRCGAGGAGSSLPVVPPGFRGMPWQQPPAIV
MPQTIVPPPPQPPSMMGLPPVPPVTMTKAINSLDNPMADVVRSITIDGGSKEIRFYNQVA
IIFMDGDEPHEIGFQHGQRVIMIDHNEPLPLSFNDDYKPFHLDGALHRIRFGFPSRELYI
DDHWYEIYFGGPPVSLPIGNSLHVLKAEGPPPNVDIGRVRRDLVVGKINMIVDAHTIVPL
FLDARQQTFQMGAEQHSIQFVDSFQYALLDGQLQKIEYGGLPKGMKLNGGRSCFIRFGTL
PKGVVAGKTHVADMVYIKTEAPAEPPQPPPMIVQPLPVVEQQPAAAAHAPAVSLPAASNA
LGNLNINDLFQKLVSSGIIGGTSIPGISAGESTSTKEAPAAAAPADAQATAAPPVYVSPP
TEPIKRINLQRPETIKTRQSAVVATLYLGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNRR
ERDSTRKATSRRWYYDLNDWRQYEEIEDVEEREKNFLDTQGQPGGPDAIDDLSQQRSLDS
PVPTCAAGNDDVDRSCDMCHEKFEQFYNEELEEWHLRSAIRVEDKIYHPLCYEDYKTSLN
PPAEQKDSKDVDMNNTDDNAMDTVLKLEDGGKEDDADKPAPNLFDDDDDDVIVLPNEEPS
VTEIVDDDEDEYVPANVTRAEMGNETEDKVEPSSGCEDDGEKQKSSQQPQNESANESDVE
IQEPNIPFTDLDTYVEKEMDDETRLALLNVKIKEEPKDEYDEDEDDGFEDVGTVVPLLPL
PEDEISINSSETQTQTIGSSPSPATIERPASVASLTLPANDDELEAADTVATVANAETEL
NGEPQESTHNLSAAGPAPALPLASLVNRIKINITKNTSSIVSNSASNGSSMAATSTPAAA
TMGSAADTQVSAISVIGGSGNCSSLETSQQVNAIQTISTIPVLCGGNTFVPKIATSAPAN
ISSISVIGSSYGTNSRNSNSIATTTAPTSAIVSAVVGAGSSSAVAQKPVTPPPAVDADPE
PVVELKPALRNVTLKRTKKVQNGTETSGLCSIM
NT seq
5682 nt
NT seq
+upstream
nt +downstream
nt
atggagcaattatttcagtcataccgcgatgatgagcgacgtattggtgaggagtatctg
tcgagtctacaggacttgaactgcaatagcaaaccgctcatcaacatgctcacaatgctg
gcggaggagaacattaactatgcccacgtcatagtccgcgtggtggagtactacatcagc
caggtgccgcccgagtttaaattgcccatactatatttaattgattcgataattaagaat
gtgagaagcagctacgtgcagctgttcgcacaatgtatagtcaacatattcctcaacgcg
tttgaatcggtgcagcattcccagtcgcagttgctggagaaggtgcgcgaacggatgtat
gccctgcgacagacctggaacgaggtattcccaccttccaagatgtatgccctagacgta
aaggtaaagcgtcttgataataactggcccattacggccaagaaccccaccaacaaaata
catgttaatcccgccattcatgttaatccggactttctcaaaacgggtttggttcctggg
atgccggttaactccacactgcccagcgacatggaggagatactccaggctaagacccgc
gagcttctggagctcaagaaacgcaaactggagcttgagctggagcaaaccaagaagcat
ttagaggagcaagagcgtcagctgaaccaggcgacggatgctattgctgtcgcacccaat
gtcgctatgccagcgccacccgcttctgttgctgctcttcgtccacctattatggatcca
gtcgttcgaaattctcgtaacgctgggaatcctgggttaccaaacacgccagctgcgcaa
cagcccttttccgcgaagtcaagggttaatccagtcaatccggctctactgaactctgtg
cgtcagcgggatccacgtttggcgcggcaaatgcaatctcaggtggaggcggctccctcg
cgatcctctgatccccgtctggagggaaaatcctcctcatcttcgcataaatctagtcga
tcgcgcagcaagtcaccagtacggaacagcagccgctctaccaaaagcaacaatggcagt
agctcccatccaaacagctcatcgaatcgcaagcgcagtgaatccaagagctcaacatct
tcatcgggctctgatgcacgacacaaaagtggaggtggtgctagcagtagctcctcgaca
ctatcgcctgccaaacgctcatctaaaccatcggcaaaggagcattccgaccgacatgac
cgaaatggatcaccgtccaattcgaagcgtaaaagcacctctccaaccacctcgccatca
aaatctaagcgcaatgctgcacacaaatcgtcatcgtccatgcgcggaaagtcgtcctcg
acccgatcacgcagccgctcgcccatcttcatggacgttgacctgcgcagcggtggtgga
aagtctcccgaacagaaaacagcagctccagaatccctatctcaagtggcagcagcagca
tcagcatcatcctcagcctcagcattagcagcggcagtagcagcaaaagtgacaatcatc
acgaatgatttagagaaaccgaatttatcaacagcattactgctaagcccatcaacatca
gcatcagcatctgcattagccgccgcatccgcaccactagtcaatcagagctcgccgcag
ggtaatgtatcggagacactgcagcaatccatcaacaaactgctgcaggtacaaggcatc
actggggagaagcgttccgcagattcgctacccccagagatcgacggggatgagcagcca
ccgcagcagaaacgcagcaaatcaactaaactggacgctctcttcggcagcgaggatgtt
gatctgcgtcgcgagattcccgctgtggtaaagcctggaagtgcaaatgcagtcatcgtg
gtggaagacgactcaatggacaactgtgatgtggaaaagccacaatccaaaacaaattcg
cagctcaagaggccatcactcgatgagctgcgcgccaagctggccaagtctgcgcgtctc
cacaacaagctatccggtaagtccgacaaagtcagagatcagtctgtggtgcagcgtctc
aagcagctggccgagctgaaggccaacgatgattcgcaggaggcgcacgacgagaagatg
cgcacgatcctcagccaggctcaggagatgtacgagaaccacaatatgaaccaagagcag
tacaaggacctggtccagaaggttgtggccattaacgagaacagcaagatgaaggagtcc
cgtcgccgacctgatggtgcggaagtggagcgtaatgcagcccgagatgctgttctgcgc
aagcggatacccaagctcaagagcaacgagaatcattcctctggctcgccacgcagcgac
ggctcccctagatatgaggatcagccaatacagggatcgacatccaccgaaaagccgacg
caaaataaacgggagaagtccaagagagagaacaagagacgaaagcccagcaaatggggc
gaacaggtggatcctgcggctgctcaaagggccgcctggcagttggccaatgtcaataac
aacaacaacaacaacaataataataataagagatgtggagctggaggagcggggagttcg
cttcctgttgtaccacccgggttccggggaatgccctggcaacagccgcctgcgattgtg
atgccacaaacgatcgtcccgccaccaccacagccgccctcgatgatgggtctgccacca
gttccgcccgtaacaatgaccaaggccatcaattcgctggacaaccccatggcggatgtg
gtgcgcagcatcaccatcgatggcggatccaaagagattcgcttctacaaccaggtggcc
atcatatttatggatggcgacgagccgcacgagattggcttccagcatggccagcgcgtg
atcatgatcgatcacaatgagcctctgccgctaagcttcaacgacgactacaagccgttc
catctagatggggccctacatcgcatccgctttggctttccctcccgcgagctttatatc
gacgatcattggtatgagatctactttggtggaccgccagtctccctgcccattggcaac
agcctgcacgtactcaaggcggagggtcctccgcccaatgtggacattggccgagtgcgt
cgtgacctggtggttggcaaaataaacatgattgtggatgcccacacgattgttccactc
ttcttggatgccagacagcagaccttccagatgggagccgagcagcattcgatacagttt
gtggacagcttccaatatgctctcctcgatggccagctccagaagatcgaatatggcggc
ctgcccaagggcatgaagctgaatggcggacgcagctgctttatccgattcggaaccctg
ccaaagggcgttgtggccggcaagacgcacgtggctgatatggtctacattaagacagaa
gctccggcagagccaccccagcccccaccgatgattgtccagcccctgcccgtagtggag
cagcagccagcggcagcagcacatgcaccagccgtatccctgccagctgcatccaatgct
cttggcaatctgaatatcaatgatttatttcaaaagctcgtctcgtctggaataattggt
ggaacctctattccgggcatatcggctggcgaatcaacctcaaccaaagaagcgcccgca
gctgccgctccagctgatgcccaagccacagccgccccaccggtgtacgtttcgccgcca
acggagcccatcaaacgcatcaacctacagaggccagagactatcaagacccggcagtcg
gccgtggtggctacgctctacctgggcatgcagtgcagcagctgtggtgtgcgtttcccg
cccgagcagaccattaagtacagtcagcatttagactggcacttccgtcagaaccgacgc
gagcgtgactcgacccgcaaggccacctccaggcgctggtactatgacctgaatgactgg
cggcagtacgaagagatcgaggatgtggaagagcgggagaagaatttcctggatacgcag
ggccagccaggaggccccgatgcaatcgatgatctctcccagcaacgttcgctggactcg
cctgtgcccacctgcgcagccggtaacgatgatgtggaccgctcctgcgacatgtgccac
gagaaattcgagcagttctacaacgaggagctggaggaatggcacttgcgcagtgccatt
cgcgtcgaggataagatctaccatccattgtgctatgaggactacaagacttcgttgaac
ccgcccgcagagcagaaagactccaaagatgtggacatgaacaacaccgatgacaacgca
atggacacggtacttaagctggaggatgggggtaaggaagatgacgccgataagcctgcg
ccgaacctgttcgatgatgatgacgatgatgtaattgtgttgcccaacgaagagcccagc
gtcactgaaattgttgacgatgatgaagatgagtatgtgcccgccaatgtgacgcgcgcc
gaaatgggcaacgaaacggaggacaaggtggaacccagctctggctgcgaggatgatggg
gagaagcagaaaagcagccagcagccacagaatgaatcagccaatgagtctgatgtggag
atccaagagccaaacattcccttcaccgatctggacacgtatgtggagaaggagatggat
gatgagacgcggttggccctgctaaatgtaaagatcaaagaggagcccaaggacgagtac
gatgaggacgaagacgatggcttcgaagatgtgggcacggtagtgccactgctgccgttg
cccgaggatgagatatccatcaacagcagcgaaacacaaacccaaacgattggatcctcg
ccctcgccggctactatagagcgaccagcttcggtggcctcgctcactcttccagccaac
gacgatgagctggaggccgcggacacggtggcgacagtggccaacgcggaaacagaactg
aatggagagccgcaggagtcgacgcataacctgagcgcagcaggaccggcaccggcgtta
cctttggctagcttagttaatagaataaaaataaatatcactaagaatacaagtagtata
gtaagtaatagtgcctccaacggctcatcaatggccgccacatcgacgccggcagcagca
acgatgggatcggcagcggatacgcaagtctcggctatcagtgtcataggcggatccgga
aactgcagttctctggagacctcgcagcaggtgaatgcaattcaaaccatttccaccatt
ccagttctgtgcggcggtaacacattcgtccccaagattgcaaccagtgctccagccaat
atcagttccatctcggtcattggcagcagctacggcaccaacagccgcaacagcaactca
atcgcgaccacaacggcaccaacttcggcgatagtctcggcggttgttggagcgggatca
tcttctgccgttgcccagaaaccagtcacacccccgcctgctgtcgatgccgatccggag
ccggtggttgaactgaagccagcgttgcggaatgtgacgctcaaacgaacgaaaaaggtc
cagaatggcaccgaaacatcgggtctctgctcgatcatgtaa
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integrated database retrieval system
