Dyadobacter pollutisoli: ON006_09345
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Entry
ON006_09345 CDS
T09794
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dpf
Dyadobacter pollutisoli
Pathway
dpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ON006_09345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpf03019
]
ON006_09345
Enzymes [BR:
dpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ON006_09345
Messenger RNA biogenesis [BR:
dpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ON006_09345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
WAC14149
UniProt:
A0A9E8NCI2
LinkDB
All DBs
Position
complement(2278542..2279777)
Genome browser
AA seq
411 aa
AA seq
DB search
MKFDDYHIAPEIKQNLETAGFKRPTDIQFKAIPAVIKGEDVLAIAQTGTGKTAAFAIPVI
DKLHKQKSSGRSEGIKCIVMVPTRELAIQITEVFTKIGQHTRVKTFSVFGGVEQGPQIAQ
LEKGIDILVSTPGRMFDLVSQGHIKLNKIEILILDEADHMLDLGFIKDIQDLIKFLPKNR
QTLFFSATINEKIKKLAYSLVRNAIRIQISPNNPVAKNINHSVAFVAMDDKRFFLERVIK
ENPDSKILVFVRTKVRAERVYSALERMGIKSLTIHGDKEQSDRLTALNEFKKGNVSVLIA
TDVSARGIDIANVDYVVNYDLPEQAENYVHRVGRTGRGTQKGLAVSFCSPEEKPILEEIQ
TYLDKPIDVLKISTTDYSQTLDFTADTSNDIKALMKEIEDYQSIKKKNKKK
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgacgattaccacattgcccccgagatcaaacaaaacctggaaacagccgga
tttaaacgtccgacagacattcagtttaaagccattcccgcggttataaaaggcgaagac
gttctggccatagcacaaaccggcactggaaaaacagccgcctttgccataccagttatc
gataagctgcacaaacagaagtcctccggccggtccgaaggcatcaaatgtattgtaatg
gtgcctactcgtgaactcgcgatacagatcacagaggtatttacaaaaatcgggcagcat
acccgtgtcaaaacattcagcgtgtttggtggcgtggaacaaggccctcagatcgctcaa
ctggaaaagggcattgatatcctcgtttctaccccgggacgaatgtttgacctggtaagc
cagggacatatcaaactcaataaaatagaaatactgatattggatgaagccgatcacatg
ctggatctgggttttatcaaagacattcaggacctgatcaagtttcttccgaaaaaccgt
cagactttgtttttttcggcgactattaatgaaaaaatcaaaaaactggcctactccctg
gtgcggaacgcgatccgaattcagatatcacccaacaatcccgtagcgaaaaacataaac
cattcagtggcttttgtagccatggatgataaaagattttttctcgaaagggtcattaaa
gaaaatcccgacagtaaaatcctcgtttttgtacgtaccaaagtccgtgcggagagggtt
tatagcgcgctggaaagaatgggaatcaaaagtctgaccattcacggagacaaggagcag
tccgaccgcctgaccgcgttgaatgagtttaaaaaaggcaatgtgagcgtgttaatcgcg
acagacgtgagcgcccggggcattgacattgcgaacgtggattacgtggtgaattatgac
ctgccagaacaggccgagaactacgtccacagggttggcaggacgggcagaggaactcaa
aaaggacttgcagtatcattttgcagtccggaggaaaaaccgattctggaagagattcaa
acatatctggacaagcccattgatgtgttaaagatcagcacgacggactattcccaaacg
ctggatttcacggcagatacctccaatgacattaaagcgctgatgaaggaaattgaagat
tatcagtcaattaaaaagaaaaacaagaaaaagtag
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