Dyadobacter pollutisoli: ON006_24575
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Entry
ON006_24575 CDS
T09794
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dpf
Dyadobacter pollutisoli
Pathway
dpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ON006_24575 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpf03019
]
ON006_24575 (rnr)
03016 Transfer RNA biogenesis [BR:
dpf03016
]
ON006_24575 (rnr)
Enzymes [BR:
dpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ON006_24575 (rnr)
Messenger RNA biogenesis [BR:
dpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ON006_24575 (rnr)
Transfer RNA biogenesis [BR:
dpf03016
]
Prokaryotic type
tRNA degradation factors
ON006_24575 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
DUF1918
Motif
Other DBs
NCBI-ProteinID:
WAC10909
UniProt:
A0A9E8N6U3
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All DBs
Position
5980985..5983357
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AA seq
790 aa
AA seq
DB search
MKDKKFKNKVERENREAKSPHHIVSYIDNLKADIAAFFDLNSEHTFRPFDVHDHFGVQDK
KVRHLINEIVHELEEAGRLVYHQNGTYQAGPNKPVNKGLTGRVDRVNKSFAFVIIEGRED
DIYVESELLNGAWDGDIVSIQPLTKNSRGSRNGRGDSGKNRVEGRVTDIVERSNADIVGI
IEVNPRYAVVQPDNKKLFDPIFLEPEEIKDAQHGDKVIVKVTQWPTRRSQAEGEIVEVLG
KAGNNDVEMHAILAEFGLPYHFPENVEAEAQKIPDKILKKEIAKRKDIRDVLTFTIDPVD
AKDFDDALSVRYLDEGNVEIGVHIADVSHYVLPGTELEKEAYRRATSVYLVDRTVPMLPE
KLSNNLCSLRPNEDKLAFSAIFEMDPKGKVLKQWFGRTIIHSDRRFSYEEAQAVLDSGEG
DHPGELQTLNKLAKILRKDRFKNGAINFETPEVRFRLDKDGTPLGIYQKERHDSNKLIEE
FMLLANKRVAEYVYALSKGEVKNTMVYRIHEAPDPDRLKTFATFVAKLGHKLEVDEENKI
AKSMNSMLAEVEGKPEQNLIESLAVRTMAKARYSVEDLGHFGLAFKRYSHFTSPIRRYPD
VMAHRLLQHYLDGGANVDKEVYEAASKHSSERERLAAEAERASIKYKQVEFMSMMDRDKE
FDGIITGVTEFGIFVEITETASEGLIRMTDLGDDYYELEKENYRIVGQRTKKIYTFGDTV
KVKVKDTNLARRSMDLYLAGTVPSPSRDNNSKDSGRRSRDTKPRESRSSGRSRKPAGAAS
SSPKPKRRRR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataaaaaatttaagaataaagttgaaagagaaaacagggaggccaagtctcct
catcatattgtttcttatatcgataacctgaaagcagacattgctgctttcttcgacctg
aacagcgaacacacatttcgcccgttcgatgtccatgaccattttggggtacaggacaaa
aaagtccgtcatttaatcaacgaaatcgttcacgaactggaagaggccggaaggcttgtg
taccaccagaacggaacataccaggccgggccgaacaagccggtaaacaagggattgacc
ggccgcgtcgaccgcgttaacaaatcctttgccttcgtcattattgaaggccgggaggat
gatatatatgtagagtctgaattattgaatggggcctgggatggtgacattgtcagcatt
cagcctttgacaaaaaatagtcgcggatcgagaaacggtcgcggcgattctggcaaaaac
cgcgttgaaggacgggttacagatatcgtggagcgttccaatgctgatatagtagggatt
attgaggtaaatcctcggtacgctgtcgttcagccggacaacaagaagctttttgatccg
atcttcctcgaaccggaggaaattaaggatgcgcagcacggggataaggtgattgtgaaa
gtaacgcaatggccaacccgcagaagccaggcggaaggagagatcgttgaagtacttgga
aaagcggggaacaatgatgtggaaatgcatgctatcctcgcagagtttggcttgccgtat
catttccctgagaatgtggaagcggaagcgcagaaaatcccggacaaaattctgaaaaag
gagattgcaaaacgaaaggatattcgtgatgtactgacgtttaccattgacccggtggat
gccaaagattttgatgacgcactgtccgtcagatatttggatgaaggaaatgtggagata
ggcgtgcacattgctgacgtgtcacattatgtactcccaggtactgagctggaaaaagag
gcttacagacgagcaacctcggtttatctggttgacagaactgtaccgatgcttcctgag
aaattgtcgaataacctctgctcacttcgtccaaacgaggataaactggcgttttccgcg
atttttgaaatggatccgaaaggaaaagttttgaaacaatggtttggacgtaccattatc
cattctgaccgtcggttttcttatgaagaggcgcaagcggttctggattcaggcgagggc
gatcacccgggcgagcttcaaacgctgaacaaactggctaagattttaagaaaagaccgc
tttaagaacggagcaatcaatttcgagacgccggaagtacgttttcgattggataaagat
ggtacgccgttgggaatctaccagaaggagcgtcacgattccaataagctgatcgaggag
tttatgcttcttgcgaacaaacgggtagcggaatatgtgtacgcattgtccaaaggagaa
gtgaaaaacacgatggtgtaccggattcacgaagccccggaccccgacagactcaaaaca
ttcgccacattcgtcgctaagctgggccacaaattggaagtggacgaagaaaacaaaatt
gccaagtcgatgaacagtatgctggccgaagtagaaggtaagccggagcaaaatctgatt
gaatcactggccgtgagaaccatggcgaaggcgcggtatagtgtcgaagacctggggcac
tttggcttggctttcaaacgctactcacatttcacatcccccattcgccggtaccctgac
gtaatggcgcacaggctgttacaacattacctggacggcggcgctaatgtcgataaagag
gtttacgaagcggcatcgaagcattcgtccgaacgcgaaagacttgcggctgaggccgaa
cgcgcttctatcaagtacaagcaggtcgagtttatgagtatgatggatcgcgacaaggaa
tttgacggtatcattacgggtgttaccgagttcgggatttttgtagaaataaccgaaact
gcctccgaaggtcttatcaggatgactgatcttggtgacgactattatgaacttgaaaag
gagaattaccggatcgttggccagcgcacgaagaaaatatatacgtttggtgataccgtg
aaggtaaaagtgaaggataccaatctggcacggagaagtatggacctttacctggccggg
acagttccgtcaccaagtcgcgacaataatagcaaagattccggcaggaggtcacgcgat
acaaaacccagggaatcacgttcttcgggcaggagccgcaaaccggctggtgcggcttca
tcgtctccgaaacctaagaggcggaggcgatag
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