Dyadobacter pollutisoli: ON006_31115
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Entry
ON006_31115 CDS
T09794
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dpf
Dyadobacter pollutisoli
Pathway
dpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ON006_31115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpf03019
]
ON006_31115
Enzymes [BR:
dpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ON006_31115
Messenger RNA biogenesis [BR:
dpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ON006_31115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
Phage_integrase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WAC12166
UniProt:
A0A9E8SLV8
LinkDB
All DBs
Position
complement(7475524..7476681)
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AA seq
385 aa
AA seq
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MSDNTASFKSLGLSEPLLKTIAEQNYTQPYPIQQEAIPAILKGNDVLGIAKTGSGKTAGF
VLPILELFQDKPAAPNRHITALVLVPTRELAVQIAVVFQTFGERLPRKVKTLAVYGGVSI
NPQMISLQGVEILVATPGRLLDLLSYKALSLSETQILVLDEADKMLNLGFAEEMKDIFFL
LPKKRQSILFSATLGDEVDAINKNQLKNPVRIEIEEEEANLDLIKQTGYFVDPERKGPLL
RYIIKTQEMKQVLVFVSATRTADNLVEKLNKNGIQAMAMHSKKSQGARTEALNKFKSGKL
TVLVATDLVSRGIDIQFLPYVINFELPRSPKDYVHRIGRTGRAESPGEALSLVCPEDVHH
FKIIQKKMGKRVEMLESYDLELQGY
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagataacacagcatctttcaaatcgcttggcctgtccgaaccactattaaaaacc
attgcagaacagaattatactcaaccatatcctattcagcaggaagccattcccgcaatt
ttgaaaggaaatgatgttctggggattgctaaaaccggttctggcaagactgctggtttt
gtattgcccatcctggaattgtttcaggacaaaccggcagcgccaaacaggcatatcacg
gcattggtactggttcctacccgagagctggctgtgcagatagcggttgtgtttcagaca
tttggtgaaagattgcccaggaaagtaaaaacgctggcggtatatggtggggtgtccatt
aatccgcagatgatatcgttgcagggcgtggagatactggtagcgacacccggcaggctt
ttggacctactgtcatacaaagcattaagtctttcggaaacacagattcttgttttggat
gaagctgataaaatgctgaacctcgggttcgcggaagaaatgaaggatattttcttcctg
cttcctaaaaaacgccagagcattcttttctctgccacattgggtgacgaggtggatgct
atcaacaagaatcagttaaaaaacccggtacgcattgagattgaagaagaagaggcaaac
ctcgatctgatcaaacagacaggttatttcgtcgatcctgaacgcaaaggaccattactc
aggtacattatcaaaacccaggaaatgaagcaggtactcgtcttcgtgtccgctacccgc
acggctgataacttggtcgaaaaactcaataaaaacggaatacaggctatggcgatgcat
agcaaaaaaagtcagggcgcccgtacggaggccctgaacaagtttaaatccggtaaattg
actgtcctcgtggctaccgacctggtttcccgagggattgatattcagtttcttccttat
gtgatcaatttcgaattgccccgctctcccaaagactacgttcaccgcattgggagaaca
ggccgtgctgaatctcccggcgaagcattatcattggtttgtcccgaagacgtccatcat
ttcaagatcattcagaaaaaaatgggcaaacgtgttgaaatgctggaatcttatgacctt
gaactacaaggttactga
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