Desulfovibrio piger: DESPIGER_0070
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Entry
DESPIGER_0070 CDS
T04638
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dpg
Desulfovibrio piger
Pathway
dpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESPIGER_0070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpg03019
]
DESPIGER_0070
03009 Ribosome biogenesis [BR:
dpg03009
]
DESPIGER_0070
Enzymes [BR:
dpg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DESPIGER_0070
Messenger RNA biogenesis [BR:
dpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DESPIGER_0070
Ribosome biogenesis [BR:
dpg03009
]
Prokaryotic type
rRNA processing factors
DESPIGER_0070
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
SFV71973
UniProt:
A0A1K1LB88
LinkDB
All DBs
Position
I:complement(68955..71453)
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AA seq
832 aa
AA seq
DB search
MSDAAESSDVAEATPTPKRRTTRRTSRAKAAPATEETATLTAATSTDAPAEQAVTDSGDA
QPADDAVAAAPRKPARRTSRRKATAPAAESPAPEAAPEASAGEEASAAQAAPGTGTAREP
DQAPAPEAAETPADTDGGQHAAPRRGTRRSPGAQRRQRAPRKKSPEAVSPQDETAPAGTG
DQAAEAAAALPADGQPVPLPAEAAAMPVMPDGGTPAAPAAVAAPRTDDAEAAPAAEDTET
AADSGAQEDGDDQPRRKSRRGRRGGRGRNRKNRDAQAENAEAAGSEADDTAGAAAPAGLP
DGASDEELWQAATGDVESLESAPARLRRRGEDSEAPKKGSVRAAAVKAKVAAGKRRMFIS
VLPGEQVEVAIAEEGRLQEYYLDMFHQRKLKGNIYKGIIHNIDTNLQAAFVSYGAGKNGF
LQIDEIHPEYWLAHHEPSKGKKFPPIQKVLKPGQEVLVQVVKEPTGNKGAFLTTWLSLAG
RFLVLTPGQEQIGVSRKVDSDEERTRLREMMNGIDPGQGLGVIVRTVSAGTTKTTLKNDL
QYLKRVWKDIRKKATEVSAPALIYQEPGLPQRAVRDYLTDDVCEIWVDNEEVADSIRETV
SLLFPRKKELVRLHTDVRMPLWERFSLRRQLDQIYSREVTLPSGGRLVFDQTEALMAVDI
NSGKISGKVNFESMAHRTNMEAAEAIARQLKLRDIGGQVVIDFIEMRDKKHVLEVEKTLR
TAMKNDRARHDVGRMSSFGLLELVRQRTGSSALSITMEPCPFCGGTGQRRNLEWQALQAL
REMRRALRTHGGDKYVFETTRELGLYLLNHKRDSLRDMEQDFGKCLEISIRP
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgacgcggccgagtcctccgatgtcgctgaagcaacccccacccccaaacgccgt
accacccgccgcacttcgcgcgccaaggccgcccctgccacggaagaaacggccacgctg
acggccgccacgagcacggatgcccctgcggaacaagccgtcacggacagcggcgatgca
caacccgctgacgatgccgtggccgccgcgccccgcaagcccgcccgccggaccagccgc
cgcaaggccacggcccctgccgccgaaagcccggcccccgaagccgctcccgaagcctcg
gccggagaagaggcatccgctgcgcaggccgcgcccggcaccggaaccgcccgggagcca
gaccaggccccggcccctgaagccgccgaaacgcccgccgataccgacggcggacagcac
gccgcgccccgtcgcggtacccgccgttcgcccggtgcccagcgccgccagcgtgccccc
cgcaaaaaatctcccgaagccgtgagcccgcaggacgaaaccgctcctgccgggaccggt
gaccaggccgctgaagcggctgcggcccttcccgctgacgggcagcccgttcccctgcct
gccgaagccgccgcgatgcccgtgatgcctgatggcgggacgcctgccgctcctgccgca
gtggccgccccgcgcacggacgacgcggaagccgctcccgccgcggaggacaccgaaacg
gccgccgacagcggcgcccaggaagacggtgatgaccagccccgccgcaagagccgtcgc
ggccgtcgcggcggacgcgggcgcaaccgcaagaatcgtgatgcccaggcggaaaatgcc
gaagccgccggcagcgaggcggacgataccgccggagcggcggcccctgccggcctgccc
gacggtgccagtgacgaggagctgtggcaggccgccaccggcgatgtggaaagcctggag
agcgcccccgcccgtctccgccgtcgcggtgaggacagcgaggcccccaagaagggcagc
gtgcgcgcggccgcggtcaaggccaaggtggccgcgggcaagcggcgcatgttcatcagc
gtgctgcccggtgaacaggtggaagtggccatcgccgaggaaggccgtctgcaggaatat
tatctggacatgttccatcagcgcaagctcaagggcaatatctacaagggcatcatccac
aatatcgacaccaacctgcaggctgccttcgtgagctacggcgcgggcaagaacggcttc
ctgcagatcgacgagatccatcccgaatactggctggcccatcacgagcccagcaagggg
aaaaagttcccgcccatccagaaagtgctcaagcccggccaggaagtgctggtgcaggtg
gtcaaggaacccaccggcaacaagggcgccttcctcaccacctggctgtcgctggcgggc
cgctttctggtgctgaccccgggacaggagcagatcggcgtctcccgcaaggtggacagc
gatgaagaacgcacccgcctgcgcgagatgatgaacggcatcgatcccggccagggcctg
ggcgtcatcgtgcgtaccgtgagcgccggcaccaccaagaccacgctcaagaacgatctc
cagtacctcaagcgcgtctggaaggacatccgcaagaaggccaccgaagtctcggccccg
gccctcatctatcaggagccgggcctgccccagcgggccgtgcgcgattacctgaccgat
gatgtctgcgagatctgggtggacaacgaggaagtggccgacagcatccgcgagaccgtc
tccctgctcttcccccgcaagaaggagctggtgcgcctgcataccgacgtgcgcatgccc
ctgtgggagcgtttcagcctgcgccgccagctggaccagatctattcccgcgaggtcacc
ctgccttcgggcggccgcctggtcttcgaccagaccgaggccctcatggccgtggacatc
aactccggcaagatctccggcaaggtcaatttcgagtccatggcccaccgcaccaatatg
gaagccgccgaagccatcgcccgccagctcaagctgcgcgacatcggcggccaggtggtc
atcgatttcatcgagatgcgcgacaagaaacatgtgctggaagtggaaaagaccctgcgc
acggccatgaagaacgaccgcgcccgccacgacgtaggccgcatgagttccttcggcctg
ctggagctggtgcgccagcgcacgggctcctcggccctttccatcaccatggagccctgc
cccttctgcggcggcacgggccagcggcgcaaccttgaatggcaggccctgcaggccctg
cgcgagatgcgccgtgccctgcggacccacggcggcgacaagtacgtcttcgagaccacg
cgggaactgggcctctatctgctcaatcacaagcgcgacagcctgcgcgacatggaacag
gactttggcaaatgtctggaaatcagcatccgtccgtaa
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